RNA id: TU33493


Basic Information

Item Value
RNA id TU33493
length 442
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G28405
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16345645 ~ 16346086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGCTGAACAGGTCGTCCATGGCGGAAGCTCTTTCCGTTGTGTTTACAGTTTGTTTTCGTTCTGCGGCGGCGGCCCAAAACTATGCTATTCGCCTATTTCATACTAGCTACTCAAAATGGAGGCTAGGCTGAGGATTTTCTCCCCGAGCTCAGGCGATGACCTCAGCGTTCACGCGCCAGCCTACAGAGCTGGCGCTCAGCAGCGCTAACTGAGCATGTGCCGTCTCTAATGCAATCAGCTCCGTGTCCGCCGAGACATCAGCCACAAACCGAGCCTCGATACCACACACAATCCGACACCGCCGCTGCTGCGAAATGAAAGCGCAGTGAAATCAACGACTAGATGTATCGGTAACACTAATCACTCCAATCAACACTTCAAAATGGATGTCTGCTCAGTTCCAGTGCGAAAGAATatccacttcttcttcttcttctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33492 lncRNA upstream 8951 16336192 ~ 16336694 (+) True G28404
TU33490 lncRNA upstream 10993 16333451 ~ 16334652 (+) True G28402
TU33449 lncRNA upstream 76093 16268709 ~ 16269552 (+) True G28361
TU33361 lncRNA upstream 190401 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 222505 16122896 ~ 16123140 (+) True G28162
TU33501 lncRNA downstream 11996 16358082 ~ 16361347 (+) True G28410
TU33523 lncRNA downstream 52159 16398245 ~ 16401066 (+) True tomm6
TU33518 lncRNA downstream 52344 16398430 ~ 16401066 (+) False tomm6
TU33519 lncRNA downstream 52344 16398430 ~ 16401066 (+) False tomm6
TU33520 lncRNA downstream 52344 16398430 ~ 16401111 (+) False tomm6
XM_026915498.2 mRNA upstream 17493 16321000 ~ 16328152 (+) True si:ch211-157b11.14
XM_026915510.2 mRNA upstream 25073 16317108 ~ 16320572 (+) True LOC113527565
XM_026931267.2 mRNA upstream 32401 16306061 ~ 16313244 (+) False c2h1orf159
XM_026924529.2 mRNA downstream 17585 16363671 ~ 16365937 (+) True ppil1
XM_026938484.2 mRNA downstream 45326 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA downstream 45329 16391415 ~ 16394007 (+) False tspo
XM_026938693.2 mRNA downstream 52323 16398409 ~ 16401099 (+) False tomm6
XM_026943326.2 mRNA downstream 114315 16460401 ~ 16463536 (+) True LOC113544464
TU33403 other upstream 163342 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1051291 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1153989 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2844349 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2846280 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2428684 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2471316 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3188355 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3764044 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4668772 21014858 ~ 21017447 (+) False insl5a

Expression Profile