RNA id: TU33523


Basic Information

Item Value
RNA id TU33523
length 895
lncRNA type sense_over
GC content 0.42
exon number 3
gene id tomm6
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16398245 ~ 16401111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTTCACCCTCTCTGAATGCACTGGCCACCTTTTGCCGTAAAAACGTCCCCAAATCTCGACCTTTTTTCGATTCGTCTCTCGGCCATTCTTCACACAACTTGAGAAAGCGACGGTACCTGGTGGCGGCCATTTTCAGACTTGGGGAAAGGCAGGACCCACATTTAAAGTCAGGATGCCGCACTGGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGGTGTGTAGAAATAATCAACGGTTTAGTATAACTATAGCTACGTCTGTGAATGTTTTCCTTTTGAAATTGCTTGTCttaatttttgtcttattttaaaagaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33501 lncRNA upstream 36898 16358082 ~ 16361347 (+) True G28410
TU33493 lncRNA upstream 52159 16345645 ~ 16346086 (+) True G28405
TU33492 lncRNA upstream 61551 16336192 ~ 16336694 (+) True G28404
TU33490 lncRNA upstream 63593 16333451 ~ 16334652 (+) True G28402
TU33449 lncRNA upstream 128693 16268709 ~ 16269552 (+) True G28361
TU33555 lncRNA downstream 35055 16436121 ~ 16440771 (+) True G28446
XR_004579529.1 lncRNA downstream 88012 16489078 ~ 16494312 (+) True LOC117599087
TU33701 lncRNA downstream 132809 16533875 ~ 16535345 (+) True G28574
TU33821 lncRNA downstream 328148 16729214 ~ 16731205 (+) True G28676
XR_003402553.1 lncRNA downstream 441178 16842244 ~ 16843385 (+) True LOC113524191
XM_026938484.2 mRNA upstream 4238 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA upstream 4238 16391415 ~ 16394007 (+) False tspo
XM_026924529.2 mRNA upstream 32308 16363671 ~ 16365937 (+) True ppil1
XM_026915498.2 mRNA upstream 70093 16321000 ~ 16328152 (+) True si:ch211-157b11.14
XM_026915510.2 mRNA upstream 77673 16317108 ~ 16320572 (+) True LOC113527565
XM_026943326.2 mRNA downstream 59335 16460401 ~ 16463536 (+) True LOC113544464
XM_026926533.2 mRNA downstream 63877 16464943 ~ 16475146 (+) True lrrc41
XM_026913984.2 mRNA downstream 653066 17054132 ~ 17066099 (+) True hyi
XM_034298932.1 mRNA downstream 778177 17179243 ~ 17184683 (+) True LOC117595909
XM_034298935.1 mRNA downstream 778178 17179244 ~ 17184681 (+) False LOC117595909
TU33403 other upstream 215942 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1103891 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1206589 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2896949 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2898880 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2373704 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2416336 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3133375 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3709064 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4613792 21014858 ~ 21017447 (+) False insl5a

Expression Profile