RNA id: TU33555


Basic Information

Item Value
RNA id TU33555
length 1376
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G28446
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16436121 ~ 16440771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caAATTAACAGCAATCATATATAGATAGAGCAATTTGTGTAGCTTGCAGCTGTGGTTCTGTGTTTGGAAATGAATGGCAAATAGTAGCTAAACAATCACAGAGCGTCTGACCCATCATAGTGAGTATGAATCGTGACTGCTTAATTTGTCTTGACATGGCACTGGTTTGATTTTTAGcaataaaaaagtaagaaaactACACATTTCATCAGAAGGAAATAGAAtgttaatgtgtaaatgttattaGTACATTAGGAAATTAGGATATGGTGTTTCTCGGCTTTGTGCCTCCTTCTTTGCTAACGAATAATAGGACTTACAGTTAAACCCATTATAAAACTTATCTAGTGATATTAGTTCATCTTAGTTCATCAAGAAGCTTATGTTTGGATGGATTTATGTTTCCATATCATCTGTGTTGGTCTTCATAGTATGGATTTGGCATCAAAGATGCAGGTATCACTGTAGGAAGAAACAGATATGGTCCTCGTGGATTGCCATGATTGGTATTataatcagaaaaagaaaaagataacgTGTGTGTATTTTAGTCTTATTTGTCATAAAATCGATTTGAGTTGgcttgctgtctttttttaCATCTTAGATTTctttaatgccattaatatgaaacaataggattataaaaatttaaaacttgtgtgtgtcattgaaataaataagtgatttaaacttgacagcataatccatatattaaaatgcagtaactcctttgcaaattatatgatttgaagctgatcatGATTTACAACTActggtttacattagttagtcttcttataaataaatttacaaacacTCTGAATTTATGGGATTTTTGTGAATactaaatttcttgtgtaaatgcttgtacgaatgatttaaaaataaatccattcacATCCAGCTTAATAAATGAGGCTCAATGTGTAAGGGGCACctttgctagatagctaactgTGTAGCTAGGAACATgatgaattaacatgagcCAGCTACCTAATGAAACTAGCAAGCTACAGAAACCTCAACAGCATTTGGCTAAggtagctagccagctaacattaccttTCTTTATACACTGTTGATAATagaagttttgtttatttcaatgtaACTCACTTGGTTACAAAAATGCATTCCTCAGATATAGAACTTTTTCATATTAGTTGTCTCAATTGTAGACCTATTGAAATGTAATTTGGAAAAGTacgtaaaagtaaaagtaattactcaagtagtttttcaccagatgacttatttactcttacttCAGTAACTTTCTTCATCACTACTTTTACttaagtgaattattactacagtagcagaATTTTTACTCAAGTTAGTGTGTTTTGCACTATTTTCCAGTACTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33520 lncRNA upstream 35010 16398430 ~ 16401111 (+) False tomm6
TU33525 lncRNA upstream 35010 16398430 ~ 16401111 (+) False tomm6
TU33523 lncRNA upstream 35055 16398245 ~ 16401066 (+) True tomm6
TU33518 lncRNA upstream 35055 16398430 ~ 16401066 (+) False tomm6
TU33519 lncRNA upstream 35055 16398430 ~ 16401066 (+) False tomm6
XR_004579529.1 lncRNA downstream 48307 16489078 ~ 16494312 (+) True LOC117599087
TU33701 lncRNA downstream 93104 16533875 ~ 16535345 (+) True G28574
TU33821 lncRNA downstream 288443 16729214 ~ 16731205 (+) True G28676
XR_003402553.1 lncRNA downstream 401473 16842244 ~ 16843385 (+) True LOC113524191
TU34038 lncRNA downstream 612159 17052930 ~ 17053746 (+) True G28865
XM_026938693.2 mRNA upstream 35022 16398409 ~ 16401099 (+) False tomm6
XM_026938484.2 mRNA upstream 42114 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA upstream 42114 16391415 ~ 16394007 (+) False tspo
XM_026924529.2 mRNA upstream 70184 16363671 ~ 16365937 (+) True ppil1
XM_026915498.2 mRNA upstream 107969 16321000 ~ 16328152 (+) True si:ch211-157b11.14
XM_026943326.2 mRNA downstream 19630 16460401 ~ 16463536 (+) True LOC113544464
XM_026926533.2 mRNA downstream 24172 16464943 ~ 16475146 (+) True lrrc41
XM_026913984.2 mRNA downstream 613361 17054132 ~ 17066099 (+) True hyi
XM_034298932.1 mRNA downstream 738472 17179243 ~ 17184683 (+) True LOC117595909
XM_034298935.1 mRNA downstream 738473 17179244 ~ 17184681 (+) False LOC117595909
TU33403 other upstream 253818 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1141767 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1244465 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2934825 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2936756 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2333999 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2376631 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3093670 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3669359 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4574087 21014858 ~ 21017447 (+) False insl5a

Expression Profile