RNA id: TU33821


Basic Information

Item Value
RNA id TU33821
length 329
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G28676
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16729214 ~ 16731205 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCAAGACAGTGAGCTTGGCACTGGTGTTAATTTCCCCCATGCTGTTAGTGGCTGTGCACTCGTAGATTGCCTCATCTCGGTGCGTCCTCAGGGGCTGGATCCTTAACACTGACCCTGAGCCATCATCAAATTCAAtcacctgaaagcgctGTGAGCTGACTTTCTTGCCCTTCTTCATCCATGTGATACGTGGCTTGGGCTCGCCAACTGCCTGGCACACGAAAGATGCAACGCCTCCAGAAATGCCAGTCTGATCCTCTGGAGACTTAATGAAGCTGGGCAtgccttaaacacacacagagggagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33701 lncRNA upstream 193869 16533875 ~ 16535345 (+) True G28574
XR_004579529.1 lncRNA upstream 234902 16489078 ~ 16494312 (+) True LOC117599087
TU33555 lncRNA upstream 288443 16436121 ~ 16440771 (+) True G28446
TU33520 lncRNA upstream 328103 16398430 ~ 16401111 (+) False tomm6
TU33525 lncRNA upstream 328103 16398430 ~ 16401111 (+) False tomm6
XR_003402553.1 lncRNA downstream 111039 16842244 ~ 16843385 (+) True LOC113524191
TU34038 lncRNA downstream 321725 17052930 ~ 17053746 (+) True G28865
TU34067 lncRNA downstream 369021 17100226 ~ 17137850 (+) True G28889
TU34197 lncRNA downstream 692616 17423821 ~ 17426323 (+) True G28997
TU34246 lncRNA downstream 799370 17530575 ~ 17535351 (+) True G29036
XM_026926533.2 mRNA upstream 254068 16464943 ~ 16475146 (+) True lrrc41
XM_026943326.2 mRNA upstream 265678 16460401 ~ 16463536 (+) True LOC113544464
XM_026938693.2 mRNA upstream 328115 16398409 ~ 16401099 (+) False tomm6
XM_026938484.2 mRNA upstream 335207 16391412 ~ 16394007 (+) True tspo
XM_026913984.2 mRNA downstream 322927 17054132 ~ 17066099 (+) True hyi
XM_034298932.1 mRNA downstream 448038 17179243 ~ 17184683 (+) True LOC117595909
XM_034298935.1 mRNA downstream 448039 17179244 ~ 17184681 (+) False LOC117595909
XM_026917771.2 mRNA downstream 661124 17392329 ~ 17396139 (+) True glulb
XM_026917748.2 mRNA downstream 702143 17433348 ~ 17437899 (+) True znf648
TU33403 other upstream 546911 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1434860 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1537558 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 3227918 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 3229849 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2043565 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2086197 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 2803236 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3378925 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4283653 21014858 ~ 21017447 (+) False insl5a

Expression Profile