Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU33936 |
| length | 695 |
| lncRNA type | intronic |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G28779 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16570790 ~ 16571524 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33657 | lncRNA | downstream | 80875 | 16462102 ~ 16489915 (-) | False | G28537 |
| TU33656 | lncRNA | downstream | 106857 | 16462102 ~ 16463933 (-) | True | G28537 |
| TU33626 | lncRNA | downstream | 211269 | 16358139 ~ 16359521 (-) | True | G28508 |
| TU33633 | lncRNA | downstream | 241369 | 16329108 ~ 16329421 (-) | True | G28515 |
| TU33473 | lncRNA | downstream | 304035 | 16266556 ~ 16266755 (-) | True | G28385 |
| TU34351 | lncRNA | upstream | 482564 | 17054088 ~ 17054656 (-) | True | G29119 |
| TU34418 | lncRNA | upstream | 821934 | 17393458 ~ 17394467 (-) | True | G29167 |
| TU34417 | lncRNA | upstream | 823242 | 17394766 ~ 17396199 (-) | True | G29166 |
| TU34423 | lncRNA | upstream | 852347 | 17423871 ~ 17429778 (-) | True | LOC113528975 |
| XR_003403011.2 | lncRNA | upstream | 854080 | 17425604 ~ 17429486 (-) | False | LOC113528975 |
| XM_026909859.2 | mRNA | downstream | 51632 | 16491681 ~ 16519158 (-) | True | LOC113523777 |
| XM_034310370.1 | mRNA | downstream | 81861 | 16476425 ~ 16488929 (-) | True | rad54l |
| XM_034298008.1 | mRNA | downstream | 116224 | 16436840 ~ 16454566 (-) | True | LOC113531657 |
| XM_026927117.2 | mRNA | downstream | 140694 | 16419260 ~ 16430096 (-) | True | prkcda |
| XM_026938056.2 | mRNA | downstream | 153971 | 16406576 ~ 16416819 (-) | True | ddi2 |
| XM_034312398.1 | mRNA | upstream | 17823 | 16589347 ~ 16622597 (-) | True | kdm4aa |
| XM_034314159.1 | mRNA | upstream | 54130 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314178.1 | mRNA | upstream | 54130 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314176.1 | mRNA | upstream | 54130 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314213.1 | mRNA | upstream | 54130 | 16625654 ~ 16832868 (-) | False | ptprfa |
| TU32920 | other | downstream | 1101561 | 15461950 ~ 15469229 (-) | False | oxtr |
| TU32916 | other | downstream | 1109789 | 15456635 ~ 15461001 (-) | True | G27925 |
| TU32819 | other | downstream | 1271771 | 15297309 ~ 15299019 (-) | True | G27843 |
| XR_003403256.2 | other | downstream | 1694800 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| TU34409 | other | upstream | 701431 | 17272955 ~ 17280173 (-) | True | G29158 |
| XR_004577384.1 | other | upstream | 942188 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34529 | other | upstream | 1377633 | 17949157 ~ 17949718 (-) | True | G29263 |
| TU34546 | other | upstream | 1499463 | 18070987 ~ 18072909 (-) | True | G29279 |
| trnae-cuc_6 | other | upstream | 2005700 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
