Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU34351 |
| length | 335 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 2 |
| gene id | G29119 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 17054088 ~ 17054656 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko05216 | Thyroid cancer |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33936 | lncRNA | downstream | 482564 | 16570790 ~ 16571524 (-) | True | G28779 |
| TU33657 | lncRNA | downstream | 564173 | 16462102 ~ 16489915 (-) | False | G28537 |
| TU33656 | lncRNA | downstream | 590155 | 16462102 ~ 16463933 (-) | True | G28537 |
| TU33626 | lncRNA | downstream | 694567 | 16358139 ~ 16359521 (-) | True | G28508 |
| TU33633 | lncRNA | downstream | 724667 | 16329108 ~ 16329421 (-) | True | G28515 |
| TU34418 | lncRNA | upstream | 338802 | 17393458 ~ 17394467 (-) | True | G29167 |
| TU34417 | lncRNA | upstream | 340110 | 17394766 ~ 17396199 (-) | True | G29166 |
| TU34423 | lncRNA | upstream | 369215 | 17423871 ~ 17429778 (-) | True | LOC113528975 |
| XR_003403011.2 | lncRNA | upstream | 370948 | 17425604 ~ 17429486 (-) | False | LOC113528975 |
| XR_003403015.2 | lncRNA | upstream | 370948 | 17425604 ~ 17429480 (-) | False | LOC113528975 |
| XM_034314159.1 | mRNA | downstream | 221220 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314178.1 | mRNA | downstream | 221220 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314176.1 | mRNA | downstream | 221220 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314213.1 | mRNA | downstream | 221220 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034314170.1 | mRNA | downstream | 221220 | 16625654 ~ 16832868 (-) | False | ptprfa |
| XM_034313328.1 | mRNA | upstream | 11699 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313340.1 | mRNA | upstream | 11699 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313333.1 | mRNA | upstream | 11699 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313342.1 | mRNA | upstream | 11699 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313338.1 | mRNA | upstream | 11699 | 17066355 ~ 17169352 (-) | False | szt2 |
| TU32920 | other | downstream | 1584859 | 15461950 ~ 15469229 (-) | False | oxtr |
| TU32916 | other | downstream | 1593087 | 15456635 ~ 15461001 (-) | True | G27925 |
| TU32819 | other | downstream | 1755069 | 15297309 ~ 15299019 (-) | True | G27843 |
| XR_003403256.2 | other | downstream | 2178098 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| TU34409 | other | upstream | 218299 | 17272955 ~ 17280173 (-) | True | G29158 |
| XR_004577384.1 | other | upstream | 459056 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34529 | other | upstream | 894501 | 17949157 ~ 17949718 (-) | True | G29263 |
| TU34546 | other | upstream | 1016331 | 18070987 ~ 18072909 (-) | True | G29279 |
| trnae-cuc_6 | other | upstream | 1522568 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
