RNA id: TU34886


Basic Information

Item Value
RNA id TU34886
length 2433
RNA type TUCP
GC content 0.39
exon number 6
gene id LOC113537624
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18794025 ~ 18816812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagaaaattcatcaacaccttctgaccaatcagaatagagactTCAATAGCGCCCTGAAAGCCAAATAAATCTACTTCATGGTTACAATTTACTTTTCTATTATACCTAATGCATTAAAACTTAACGTTCAACTGAAACCGTTCCCCCAGGAAACATCACATTACATGTGCTAatgttgtgtaatttttttgttttttctttctttttttgttttgccgCAGTTTTGCCGATTCTGTAGATATCTGGGAGGGCTGATAAACGCGCATTATCCAATACGATGCGTCTAATTTTATCACGTGATTTAGAAGTCGCTAATGATCCGTCCAATTACATCGCTTTGCAGTGCAGCGGTCTCCCGCCatcttaaaggaaaaacagaatgCCTTTTGATTGTAAGTATAAAAATGGAGGTCAAAAAGCGAACagggagaaaagaaaagtaattGGACTGGGTAAAGTTCCCATAATTCTATAATTATGTTTTACACCTGGTCCGTCTGGTAACTTGTCTCTCTCCTCGACAGTGAACTCTTCTGTCTGATGAGGACCGGGGATGAACACACTGTGAGAGCGTTCTGTCCATTCCTTCGTGACTGATTATATTGGGGTCTGAGGAGCAGAACAGTGCCTATTCTTGCTTAGCGCTTAGTCCACAGACAGCTGAAAGAAGACGACAGAAGGGAGGAAAATAATCCTGGCAGCACATTGAAGAATCAGACGTTAATCTACTTAAACACCTCATGAATACTTGACTACTCAGTGGCCACTAAGTGTTGTAACCACTTTCTAGCTAAAGTTCTATAGATACTTCAGATCAGTAAGTACTCACCAGACTTGGAACAGGGCTCTTCAGCAGAATTTGGtatttcagaatctgctgatcatctgggattttcatgcactgCAGTCTCTGGaatttgcacagaatggtgtacagcagttctgtgggtggaaacactttgttgagagggtagaggagaatggccagactggtttgagccaCCACTAAGGGCGATGGTAACACAAATAGCCACTCTtaacaaccgtggtgagcaggaaagcatctcGGAGTGCATGTCAAACCTTGAAGCAGATGTGTACAACAACAGAAGCCCATAttgggttctactcctgtcagccaagaacaggaatctgggatgacagtgggcacaggctcttCAAAACTAGGCAGCTGAAGATGTTTTTCCAAACTTCGAAACCGTCCAGTTTGAGTCATGGCCTTGCTTTTTGCCTTGCTCCTTCACATCAGGACTCACTCAACACACATAAGGAATTGCTGAGAGCCCCTGAacagagtcaaacacacacaaatgcagcaCTGGATTATACAGTGTCTGTGGATGGAGGGATCCGGTTAACTGTGCGCTGTATGAAAGCGTGTGGTTGGCAGGAGATGATGACCCAGGTCCAGGTATTTGGTCCTGCTCAGAGTTTCTGAAAAGAGCCATTCATGCGCAGAATGACATTACtcagaaacaggaaaatctTTAGTGAATAGTACATTGACTTTGGTCTGAATTGCACTCTTTCAAGTGGGGCAAAGGCCATCAGGCCCCTTCTGGATCTGCGCTGCTCAGAAGTTTCAAAGCTGATCAAAGAGTCCTAGTCACAGTTCTGCTGGTTGAATGTCAGTGAAATATTTAGTGATTGAAACCAGGCATAATATTATGTACATGCAACAAAACAACAAGACTTAagtctctgtatatatatattttttttacacgtaATCCACTTCTGTTCCTTTCCATAATTGATGGTTCCTGAAGTGCCAAACAAATTCAAAGCATAAAAAGTATTTGTATAATTCTCATACAGGCACTCCTTAGAACCTTGAATGCTTCTGGGAATGGGATGGAAATGCACCTTTAGATATAGCCTAAATGTCAGCTCATTAACAGAGTTATGTACAAACTAGTGCTGAATGGGGTTAAGGGTTAAGGCAATCAGGGCTTTGGGGTTAATTACCTAATTTGCAAAACTATAGCTGTAGACTgtgaatgcattttaattaacgGCTATGTTTATTTGTTCCCTTTGCAGTAATTCCCTTTCAAAGGAAAGTGCTTCTGCTTATTTGTCCTGAAATGGGAAACTGATTAAAGAACATTTGGTGGACTTGAGTGAAATGTGCCTCTATGTTTTAAGTCTACCATGAACACTATATTCCTTTAGAGTGGGTTCTGGGACTTCTGAATCTTAAATTTGGcttattttctaatttatatTGGTATGAGCACCCTCATGTGCATCATTGTATATGATATGTGTACATCATCATGTATTATTGTTGAAGGAAGCATGCTTGCTTAGTATTTCTTGACTTAGTATTTCTTGTATGCAAAGTGCATTCATGCCTTGTATGCAAAGTACTGCATGCgctttttcaaataaattctTATTTCAACAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34839 lncRNA downstream 159675 18634078 ~ 18634357 (-) True G29551
TU34830 lncRNA downstream 178158 18614869 ~ 18615874 (-) True G29542
TU34829 lncRNA downstream 179308 18614357 ~ 18614724 (-) True G29541
TU34718 lncRNA downstream 341056 18452468 ~ 18452976 (-) True G29439
TU34596 lncRNA downstream 645283 18148228 ~ 18148749 (-) False zgc:153916
TU34947 lncRNA upstream 77234 18883984 ~ 18887011 (-) True G29612
TU34949 lncRNA upstream 83967 18890717 ~ 18895805 (-) True G29614
TU35046 lncRNA upstream 177312 18984062 ~ 19049735 (-) True G29678
TU35173 lncRNA upstream 452200 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 576564 19383314 ~ 19385251 (-) True LOC117596148
XM_026912723.2 mRNA downstream 102950 18688598 ~ 18691082 (-) True sox14
XM_026927315.2 mRNA downstream 170424 18615977 ~ 18623608 (-) True LOC113534471
XM_026916472.2 mRNA downstream 207806 18502917 ~ 18586226 (-) False hs2st1b
XM_026916382.2 mRNA downstream 208270 18501538 ~ 18585762 (-) True hs2st1b
XM_026920882.2 mRNA downstream 329461 18449257 ~ 18464571 (-) False lmo4b
XM_034312132.1 mRNA upstream 13307 18820057 ~ 18835789 (-) True hdlbpa
XM_026927091.2 mRNA upstream 109875 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 151023 18957773 ~ 18961671 (-) True dtymk
XM_034310739.1 mRNA upstream 157541 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA upstream 157543 18964293 ~ 18969447 (-) False agxta
trnae-cuc_6 other downstream 216737 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 721123 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 844314 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 1264717 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1513859 17272955 ~ 17280173 (-) True G29158
trnag-ucc other upstream 9509 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 10377 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 573691 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 579692 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2657111 21463861 ~ 21531428 (-) False raver2

Expression Profile