RNA id: XR_004579388.1


Basic Information

Item Value
RNA id XR_004579388.1
length 5221
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC113537624
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18794025 ~ 18816812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAAAATGGAGGTCAAAAAGCGAACagggagaaaagaaaagtaattGGACTGGGTAAAGTTCCCATAATTCTATAATTATGTTTTACACCTGGTCCGTCTGGTAACTTGTCTCTCTCCTCGACAGTGAACTCTTCTGTCTGATGAGGACCGGGGATGAACACACTGTGAGAGCGTTCTGTCCATTCCTTCGTGACTGATTATATTGGGGTCTGAGGAGCAGAACAGTGCCTATTCTTGCTTAGCGCTTAGTCCACAGACAGCTGAAAGAAGACGACAGAAGGGAGGAAAATAATCCTGGCAGCACATTGAAGAATCAGACGTTAATCTACTTAAACACCTCATGAATACTTGACTACTCAGTGGCCACTAAGTGTTGTAACCACTTTCTAGCTAAAGTTCTATAGATACTTCAGATCAGTAAGTACTCACCAGACTTGGAACAGGGCTCTTCAGCAGAATTTGGGTAAGTGACAGCCGGGCACACACCCTTGCTAgtctaaatgttttattaatatttatcacaGGATTTAACTGCTAAATGCATGCACACCTGCTGCGATTCTGTATTGGTGCACTAGCATTGCACCTGTGGCACAGTTTAAATATAAACTCTATACATGCATGTAATGAGTCAACAATATTCTTTCTTCATCTGGAATTAGTCAAGAAAACATTAATAACAGATTTACTTAAATGCATTGCCGCAAGTTGGTTTTGATAACACTGTGGATTTTAGCTAGCTTACAGCATTCAGTGTGGCCATGAGGAGCATGCAGCCTACCTTTTTATAGCAAATTAATACAGCATTCCTAAACACTGAAGTGACTGATGTTTAGGTAAGGGATCTTGctacactgatattttttttcttgttttttcacTTAGCAGATATGTCCTGAGGGTAGCAACTAAAACGATGTGCTGCCAGTAGCACAATCTACTTATTTTACCTAGGAGATATCTGTAGCCAGATTTTGCAGAAACCTGACTTGCTTTACTTGAGCTACCATTTTTGGTGCTTCTCATTAATTTAGTTGTGCTAGAAGAACTGTGCTTTAAAGGAGATTTGGCCTTTTGTTTAAATATGCAACTATAAGGTACTGTGCATATTACTAATAATCAGCCTATTGGGTTCCCATTTTACTATGTAAAAGCCACACAAAGTGGCAGTACTTCcacatcacacatttttcactgaCTATTTTTGCCCCTGAATAAAGTTTTGTGCTGGGGTTGATATCAATGCAATGCCTGCACAGGTACAAGCAAATATGTTCCAGCTTGAGCTTCTAAGCACTGGGTTTAAAATGTCTGTGGATTGGTTACATGGattaaactttcatttttatattattatgaagCAGTGCATTGCTTCAATGCTGTAGTTCTAGTTTTGAAAGCAGCTTTCTAGTAGTTCTCCCCAGGCCATCTCCCGTCAATTTTGAATCCCACAATGCTTTGGAAATAGAATATGCAACTAGTCTTGTCATTGGAATAACATCTATTGCAatgtatgaaatatttctaCACCCTTAAATTTAGCAAAAAAAGTCTtcagattttaaatttattttttaatttacatgttATATGCACTTACTTGAAAGTATATAGTGGCTTCATGAGATTCATCTGACGGTGAACATGGGTATTAACTGTCTTCACAGTTTTACATATCATAACTGCAAATGCGATATAAGTTATCCAAAAGAAGAGGAGATGCATTCCAACAGTTCAAAATGGAtaggtttgtgtttgtttatatatataaaaaatattcctttctttctttttcccatttgATTAATGCTGTTTAGGTTAGGTTTAACTTAGTGAACTATAGAAACAATGGTGGAACCACAGTTCtttcaaaatagtttttttgttCTACAATGCACGTCTCCATATGCAGGTATTGAGACATGATGACATTGAAATATATATTGAGTTTAAATCAGACTATACTAGCATAGAACACTTACCTAATGTCTTTAGCATTTTATCGAccacaatatgtttttttaaaaactgtattacATGAACACCTCATATGGGAGATCCGTATTTCTGATAATGATGATTGTTTGATGTGTGCCCATATCTCCACCAGGGGGTGCTGGATTACAGTGTTAAGGGCCCAGAGGAGGGCTGCAGTTCTCTGAGTCTCACACAGTGCCTCAGTAGTAAGGATCTGTTCCTCTAAGCCTCTGGCTGACAGCAACACAGTACTCTTATTTAAAGCAATTTCAAACATGTCTTGTTTGACAAGTTTTAAATCCTACTTAACACTCTATAACAGCTGTGAGTTTACTGTCAGAATTAAAGGGAGAAATTCTCAGAGGGGGGAGAAATTATCACTTTCATTTTGTTCTGCAAAAGGGACATGGCAGGGGTGTTTACCTAGGGATGAATACATTATTACCCATTTGCAACACAATGCCTTTCAGCAGCATAAAAAGGGCTCCTGGAAAAGTTTACCTTATATTTTAATTGCTGACATCATGGAGAATGGAATAAAGGCTGCACGTTAGGTCTTGTGGGGCAAAGCAGACGTCTCCGGAGATCAAACCCTTCAGCTGGGTTTAACGTGCAACTACATGAACACTGTTGCTAATGGATGTAAACCTGCATGCGTATTACGGTGGTCCATTTCTCCCTGCTTTGTGGATGGAACAAAAAGTGTGGAGGAGCTGTGTGTTCCTTTGTACACTTGTGCAGTCCTGGAAAATTGTAGCCTTTAATAGAAGACACAGAATTCATGGAATTTAAATAGAGGCCCTGATTAAAAGTAATCGCTTTACGGAGAGGCAAAAGTGATATTCTGAAATTTCCAATAATAAAAACTATTCCCATTAATAAAAACTGTACTTCTCTGGATGCTCTTTAAATCAAAATAGTCCTTTTTAATAAAGACAACATGTTTTTAACCAACTAAAATATCAGGAAAACAAAAGGTGAAATAACTAAAAATAGTTAGCTGTGTATGATTCTGTACCCTGCTTCCATTCcttggtgttacacactgatttcttcctcctcctctatTTTTTTATCTGCTCCAAGAAGCAAAAACAAATCACCAAATGTAACAATCTTCTCCCTGTCCTGCTCGCTCCAGCATGTGAGGAGGTGCACAGATAAGAAGCACACTACGTGTTGGTGCTGTGTGAAAGACACTCGTTATCTGCTCCTGCCCCCGACTCCTGCTTAGTCTAGTCAGCCCCAGAAATATGTGGGGAAATCAGATAGGGCCAAATCGGCCCATCTCAACATCAGTGCAAGCGCATGCCTTGCCACTGATGTTTACTCAGAAATATGTCAATATTGCGCGCTCAGGCCGGATCCTGCATGCGGACAGCACCTCCGCTGGTGACCTCACTGTGTTGAGACGCAGAGATGAGTGGAAGGGGCATCTAAAATGGTATGAACTGCAGTGTGAGATGTTTTGCAGCAAATGCCAAATAAATGTGGCATTGTACATTCACTTTTATAgtaacacctgcacattcatgcaattattcaatcagccaatcatgtggcagcagtgcaatgcataaaatcatgcagctacaggttaagagcttcagttaatgttcagttAATGTAACATCAGATATCAGCATGGCgaacaaatgtgttttcagtatttcagaatctgctgatcatctgggattttcatgcactgCAGTCTCTGGaatttgcacagaatggtgtacagcagttctgtgggtggaaacactttgttgagagggtagaggagaatggccagactggtttgagccaCCACTAAGGGCGATGGTAACACAAATAGCCACTCTtaacaaccgtggtgagcaggaaagcatctcGGAGTGCATGTCAAACCTTGAAGCAGATGTGTACAACAACAGAAGCCCATAttgggttctactcctgtcagccaagaacaggaatctgggatgacagtgggcacaggctcttCAAAACTAGGCAGCTGAAGATGTTTTTCCAAACTTCGAAACCGTCCAGTTTGAGTCATGGCCTTGCTTTTTGCCTTGCTCCTTCACATCAGGACTCACTCAACACACATAAGGAATTGCTGAGAGCCCCTGAacagagtcaaacacacacaaatgcagcaCTGGATTATACAGTGTCTGTGGATGGAGGGATCCGGTTAACTGTGCGCTGTATGAAAGCGTGTGGTTGGCAGGAGATGATGACCCAGGTCCAGGTATTTGGTCCTGCTCAGAGTTTCTGAAAAGAGCCATTCATGCGCAGAATGACATTACtcagaaacaggaaaatctTTAGTGAATAGTACATTGACTTTGGTCTGAATTGCACTCTTTCAAGTGGGGCAAAGGCCATCAGGCCCCTTCTGGATCTGCGCTGCTCAGAAGTTTCAAAGCTGATCAAAGAGTCCTAGTCACAGTTCTGCTGGTTGAATGTCAGTGAAATATTTAGTGATTGAAACCAGGCATAATATTATGTACATGCAACAAAACAACAAGACTTAagtctctgtatatatatattttttttacacgtaATCCACTTCTGTTCCTTTCCATAATTGATGGTTCCTGAAGTGCCAAACAAATTCAAAGCATAAAAAGTATTTGTATAATTCTCATACAGGCACTCCTTAGAACCTTGAATGCTTCTGGGAATGGGATGGAAATGCACCTTTAGATATAGCCTAAATGTCAGCTCATTAACAGAGTTATGTACAAACTAGTGCTGAATGGGGTTAAGGGTTAAGGCAATCAGGGCTTTGGGGTTAATTACCTAATTTGCAAAACTATAGCTGTAGACTgtgaatgcattttaattaacgGCTATGTTTATTTGTTCCCTTTGCAGTAATTCCCTTTCAAAGGAAAGTGCTTCTGCTTATTTGTCCTGAAATGGGAAACTGATTAAAGAACATTTGGTGGACTTGAGTGAAATGTGCCTCTATGTTTTAAGTCTACCATGAACACTATATTCCTTTAGAGTGGGTTCTGGGACTTCTGAATCTTAAATTTGGcttattttctaatttatatTGGTATGAGCACCCTCATGTGCATCATTGTATATGATATGTGTACATCATCATGTATTATTGTTGAAGGAAGCATGCTTGCTTAGTATTTCTTGACTTAGTATTTCTTGTATGCAAAGTGCATTCATGCCTTGTATGCAAAGTACTGCATGCgctttttcaaataaattctTATTTCAACAgtattata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34839 lncRNA downstream 159668 18634078 ~ 18634357 (-) True G29551
TU34830 lncRNA downstream 178151 18614869 ~ 18615874 (-) True G29542
TU34829 lncRNA downstream 179301 18614357 ~ 18614724 (-) True G29541
TU34718 lncRNA downstream 341049 18452468 ~ 18452976 (-) True G29439
TU34596 lncRNA downstream 645276 18148228 ~ 18148749 (-) False zgc:153916
TU34947 lncRNA upstream 77634 18883984 ~ 18887011 (-) True G29612
TU34949 lncRNA upstream 84367 18890717 ~ 18895805 (-) True G29614
TU35046 lncRNA upstream 177712 18984062 ~ 19049735 (-) True G29678
TU35173 lncRNA upstream 452600 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 576964 19383314 ~ 19385251 (-) True LOC117596148
XM_026912723.2 mRNA downstream 102943 18688598 ~ 18691082 (-) True sox14
XM_026927315.2 mRNA downstream 170417 18615977 ~ 18623608 (-) True LOC113534471
XM_026916472.2 mRNA downstream 207799 18502917 ~ 18586226 (-) False hs2st1b
XM_026916382.2 mRNA downstream 208263 18501538 ~ 18585762 (-) True hs2st1b
XM_026920872.2 mRNA downstream 329454 18449257 ~ 18464571 (-) True lmo4b
XM_034312132.1 mRNA upstream 13707 18820057 ~ 18835789 (-) True hdlbpa
XM_026927091.2 mRNA upstream 110275 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 151423 18957773 ~ 18961671 (-) True dtymk
XM_034310739.1 mRNA upstream 157941 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA upstream 157943 18964293 ~ 18969447 (-) False agxta
trnae-cuc_6 other downstream 216730 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 721116 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 844307 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 1264710 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1513852 17272955 ~ 17280173 (-) True G29158
trnag-ucc other upstream 9909 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 10777 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 574091 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 580092 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2657511 21463861 ~ 21531428 (-) False raver2

Expression Profile