RNA id: TU35002


Basic Information

Item Value
RNA id TU35002
length 236
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC113533886
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19061097 ~ 19087211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTATGCTGTAACTGTCAAAAATGCCCAGAGGAAGCTCAGCCTGGACAGTGTTGAGATGCCAGACAGGAGCCAGGTTCACCGCAAGGCCAGTTTGGATATCTCACCAAAAAAGATGATAGAGCATGGCTCTTTGGGGCAATTCTTCAAGCAGAGAAGCACCATCAACAAAATGATCGGCAACTGGAGAAGCATGATCTCAATTGTTCCATCACGGCAAATCAGGAGGCTTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35001 lncRNA upstream 297 19085924 ~ 19086161 (+) False LOC113533886
TU34993 lncRNA upstream 35415 19050824 ~ 19051043 (+) True G29641
TU34992 lncRNA upstream 36020 19050226 ~ 19050438 (+) True G29640
TU34910 lncRNA upstream 137944 18933601 ~ 18948514 (+) False boka
TU34870 lncRNA upstream 250737 18818725 ~ 18835721 (+) True G29569
TU35019 lncRNA downstream 105856 19192549 ~ 19195409 (+) True G29656
TU35041 lncRNA downstream 113622 19200315 ~ 19202099 (+) True G29674
TU35172 lncRNA downstream 172355 19259048 ~ 19259266 (+) True G29792
TU35203 lncRNA downstream 328912 19415605 ~ 19416908 (+) True G29819
XR_003403464.2 lncRNA downstream 451292 19537985 ~ 19540059 (+) False LOC113533855
XM_026939069.2 mRNA upstream 25786 19052122 ~ 19060672 (+) True scly
XM_026939015.2 mRNA upstream 25786 19053132 ~ 19060672 (+) False scly
XM_026938931.2 mRNA upstream 25786 19053278 ~ 19060672 (+) False scly
XM_026939139.2 mRNA upstream 25786 19053410 ~ 19060672 (+) False scly
XM_026914133.2 mRNA upstream 36708 18988005 ~ 19049750 (+) False kif1aa
XM_026912916.2 mRNA downstream 3191 19089884 ~ 19096027 (+) True klhl30
XM_026922789.2 mRNA downstream 11044 19097737 ~ 19152457 (+) True crocc2
XM_026925815.2 mRNA downstream 67384 19154077 ~ 19196248 (+) True sned1
XM_026925822.2 mRNA downstream 67384 19154077 ~ 19190437 (+) False sned1
XM_026925831.2 mRNA downstream 73792 19160485 ~ 19196248 (+) False sned1
TU34871 other upstream 259538 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 268983 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 2904155 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3792104 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3894802 15191584 ~ 15191656 (+) True trnaf-gaa_15
TU35395 other downstream 447748 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1023437 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1928165 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 3511648 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 4389258 23475951 ~ 23476023 (+) True trnaf-gaa_16

Expression Profile