RNA id: XM_034310260.1


Basic Information

Item Value
RNA id XM_034310260.1
length 3279
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113543059
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20000046 ~ 20020226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatactctcTTCTCTGTATACTATTCTCTCTGTATACTTTAAGCAATTTAAATGGCAAATAACAACACGGAGACTTTGTGGAAAACAACTGTTATTGTCAGTACTTCCCTTCAGAATAATGAAATTTCAGTGGTGCTTTTAGCACAACAACACCTACTTCGTTACTCAGACAGTATTGATGGCGGTACACTGGTCTTTCCTCTCTCAGGTGTGGCGTTCTTGTTGATCACCCCAGAGGAGTTTCCTGAAAAGGCTGAGTGTGAAGAATTCTTTAGAAGGATTGAAAAGTTCATCCAGGTCCACAGAAACAGCTTTCTTTTGCTCCAGGCGCCAGCATACGGCACAAGAGAATTGGAGATTGTGTCTGCAGTGCAGAACAGATTCTTTGGCAGTAATCTCAAAGTCTTACCTGTCCATAGTAATGGGGACGCTGTCAAGGGAATGCTAACCATCGCTAAAgcgatGATCTACGTGCTGTGGAAAAACCACGTATCAGATGCtgctactcaagaaaaatctggcaagctcagaggcatgaactacacacagcatGGTGTCAGTGATGTCGCATCTGTTTTCCACTGAACATTTATGGTGCCTGAACTGAAAAGATCTTGCACTTTAAATACCAGAATTCCAGGTAGGCCTCTGTCCTGTGCATGTTACATCTTAGTTACATGCTGGTACCAGAGGGAGGAAGAAACAACAGATCTATACTTCTACACCAGCACAACTACAGCTGAAGCCTGCGTGCCCTTTAGTAAATCGGCATTCTGATGGCAATTACTAGTGTTGACTTGTTCCCAATCAATACATACAGAGTGGGACGCTTCAAGTGCAGCCTGTATTTTTAGTAGagacactgtgtatgtgtgtgtgtgcgtgttagtGATCAATATGCCAGTGCCCGGTTACCCCCAGCAATGGAGCCCCGTCTTTATGGGCAAGTCCCTACGGCAGCGGAGGCTGGGATGTTACACGCGAACAGGCTGTCAAAATGATTTTGTCACTCCACTCATTCTGTGGTATTTGGAGATGCATACGTGCTGCATTGAGGGGTCCCTGTGTCTTTTTCGTGAGGTGATAGAGgcttttagctttttttccctccctccctttggCCTCCCTTTTTCCATTTGAGTGCCTGCTCAAGAGTTAAATCTAATAATACGTCTCACTCACTGGCCAGTGCTTCAGGTCAGTCAGCATCCATTTTGTTCTGAGCTTAtctgttttaatttaaacaatattgagtataatgtttttaaagagaagcttgtacaaaaataaattttactaCTGACTCTAATGGAGATCATTTGTAGATATATATTCTGTTGTATATGTCACAGAAAATTCTCTTCAGTCACATCGGTGCATTTACAGTATTGTAGAAGAGTCTCTAACTGAACTGGGTGGTGTGCCGCTTAGAAGAACTTTGATACGGCACAAGCAGATCAGGTTCTTCTTGGCATCATAAATGTTTCAGAGCGAGCAGGAGTGGAGTCTCAGCTCCATCAGAGAGCCCCTGCAGACCGGATCTGTGTCTTCTGCTCATGCTTCGCTGCTCTAGGCCTCAGCGTATTATTGTGCAATGTTCTGATTAAAGAGATTAGACattgcatttgtatttataaaaaaagtcacacaaacttCACGAGTGATCACATGATTTTACAcgtttttagacacttcacgTGTTATGTTCAcatgtaatgcattttatttctccATGTGTGATTATTTCACATCATTCGTTTAGTTTTACATGGTaaattttcacatgtaatgcaTGTAGATTCAGTATTTACTTGAATTCACACGTGCATTTTCAGAGTACAACATGGTGAAATGTGGCTTCACAAGTGATCACGTATTACTCAGAttatcacatgtgaaaaatgtgaacgATTTTTCCATAAGGGCTGTTATTCAGTGAAAGTGTGGTTTCAGATACgatgtgttgtgtttaatgaaCAGTGTTGTTCTGTTCATAGCTCGCTGCCCATCAGAGGCTTGAACAACGGCAACACTAAAACAGCATCACAGCTGTTCATGTAGCTGACTCGATCAGTAAGACGACTCTTGTGTTTCAGGTTAGACACATGAGGCATGTCTGAGGGAGCAGGTGAGAAAATGTggaagtgtgtttgtgaaattgaggtttttttctttggtgtttttttgtttttttgctgcagGTGTTTGGTtatgagacacacagacacacagaaaaagaTGTTTAGCAGAAGTGCTTGCTAACTCACAGTCGGGTTGATTCTTCAGTAGAAAGACACATGACCGTCCCCAGTTCCCTGAACAGACATTAGTACAGGCTTGAGCAAGCCTACGTCCAAGCATCAAATCATTCAATAAATCAGAACATCAAAAGCAACTTTACTTGAATGCCTTAGcatgaattttttattatatttaaggaaaatcttttgtcattttttttacccTGGCTGTCtttttcttgcttgctttctctctctgtctctccccttTGTGACACCATATGCTCGGCTTGGCTTGCTTGGCTTGTAATGGATCTTATGAATTTTTCAGAGAGATTCATAGCTTCCATCATCCCTGGTTAAGTCGAGGACTGTATCACCGAGCagcaactatttttttttttttcgctgctTGAAAATCACACATTATTCACAGAGACAAGATTTAAGCTGACTGAAAGAGAGGAGCACTGCTTTAATGCTGAGCTGCTAAAGGTGTTTCTGTGTTAACAGCAAGGATTATACTACCTAATGCATTTGAAACATTTGAGTACACCAGGCTTCAGAGTCCTCATAGCACTTTTCGGGAGATTTATATGACAGGTTTGAGGAGGCGAGAGGATTGGTATTACAGGAATAAATGTGCTTTAGCATTTATAGTTTTTAATAACAGCTCCTGAGCTCCTTGACTGTTCCTATCATGTAGGATCTATGGAAattgttttagtttttagtgCATTCATGCTCTTAGACAATGTGGTAACAAACATGATGTATGTGTGATATTAAAAGAGAAGTGTTTAAAACAATAACGTgataatttattgttttattcagaATAAAACAATATGTGCTTTCATAGTAGGGTTTACTGGTCAGTTCACTCAAAACTTATGatctaatttttaattaatttgatcACAGAATCAAATACATCATTTTATCTCTGCATGATATCTTGAATAACTGACATCTTGAATAACTCCTTACTCACAGTTGATCAGTCAGTGATATGTAATGTTAAATGAAGCAGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35679 lncRNA upstream 81678 19918145 ~ 19918368 (+) True G30224
TU35466 lncRNA upstream 179675 19820142 ~ 19820371 (+) True G30049
TU35416 lncRNA upstream 434023 19565810 ~ 19566023 (+) True G29999
TU35408 lncRNA upstream 441409 19553171 ~ 19558637 (+) True LOC117596099
TU35407 lncRNA upstream 444480 19553171 ~ 19555566 (+) False LOC117596099
TU35757 lncRNA downstream 17509 20037735 ~ 20039974 (+) True G30288
TU35759 lncRNA downstream 17509 20037735 ~ 20039974 (+) False G30288
TU35760 lncRNA downstream 17509 20037735 ~ 20039974 (+) False G30288
TU35761 lncRNA downstream 17509 20037735 ~ 20039974 (+) False G30288
TU35765 lncRNA downstream 17509 20037735 ~ 20039974 (+) False G30288
XM_034310075.1 mRNA upstream 44012 19884761 ~ 19956034 (+) True tp63
XM_034310077.1 mRNA upstream 44140 19884761 ~ 19955906 (+) False tp63
XM_034310076.1 mRNA upstream 44140 19884761 ~ 19955906 (+) False tp63
XM_026920707.2 mRNA upstream 44140 19909283 ~ 19955906 (+) False tp63
XM_026920715.2 mRNA upstream 44140 19909283 ~ 19955906 (+) False tp63
XM_026921295.2 mRNA downstream 83978 20104204 ~ 20112519 (+) True rpl5b
XM_026923907.2 mRNA downstream 179299 20199525 ~ 20207753 (+) True atp1b1a
XM_034311045.1 mRNA downstream 225348 20245574 ~ 20249361 (+) False zgc:172121
XM_026926725.2 mRNA downstream 225755 20245981 ~ 20249458 (+) True zgc:172121
XM_034311038.1 mRNA downstream 238595 20258821 ~ 20265493 (+) True si:ch211-201h21.5
TU35395 other upstream 463032 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1173126 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1182571 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 3817743 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 4705692 15278827 ~ 15294354 (+) False fancd2
XR_003403752.1 other downstream 89904 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 994632 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2578115 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3455725 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 4000152 24020378 ~ 24021036 (+) True G32684

Expression Profile