Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034310262.1 |
| length | 1037 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC113543059 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 20000046 ~ 20020226 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU35679 | lncRNA | upstream | 81678 | 19918145 ~ 19918368 (+) | True | G30224 |
| TU35466 | lncRNA | upstream | 179675 | 19820142 ~ 19820371 (+) | True | G30049 |
| TU35416 | lncRNA | upstream | 434023 | 19565810 ~ 19566023 (+) | True | G29999 |
| TU35408 | lncRNA | upstream | 441409 | 19553171 ~ 19558637 (+) | True | LOC117596099 |
| TU35407 | lncRNA | upstream | 444480 | 19553171 ~ 19555566 (+) | False | LOC117596099 |
| TU35746 | lncRNA | downstream | 7233 | 20019584 ~ 20019947 (+) | False | LOC113543059 |
| TU35757 | lncRNA | downstream | 25384 | 20037735 ~ 20039974 (+) | True | G30288 |
| TU35759 | lncRNA | downstream | 25384 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35760 | lncRNA | downstream | 25384 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35761 | lncRNA | downstream | 25384 | 20037735 ~ 20039974 (+) | False | G30288 |
| XM_034310075.1 | mRNA | upstream | 44012 | 19884761 ~ 19956034 (+) | True | tp63 |
| XM_034310077.1 | mRNA | upstream | 44140 | 19884761 ~ 19955906 (+) | False | tp63 |
| XM_034310076.1 | mRNA | upstream | 44140 | 19884761 ~ 19955906 (+) | False | tp63 |
| XM_026920707.2 | mRNA | upstream | 44140 | 19909283 ~ 19955906 (+) | False | tp63 |
| XM_026920715.2 | mRNA | upstream | 44140 | 19909283 ~ 19955906 (+) | False | tp63 |
| XM_026921295.2 | mRNA | downstream | 91853 | 20104204 ~ 20112519 (+) | True | rpl5b |
| XM_026923907.2 | mRNA | downstream | 187174 | 20199525 ~ 20207753 (+) | True | atp1b1a |
| XM_034311045.1 | mRNA | downstream | 233223 | 20245574 ~ 20249361 (+) | False | zgc:172121 |
| XM_026926725.2 | mRNA | downstream | 233630 | 20245981 ~ 20249458 (+) | True | zgc:172121 |
| XM_034311038.1 | mRNA | downstream | 246470 | 20258821 ~ 20265493 (+) | True | si:ch211-201h21.5 |
| TU35395 | other | upstream | 463032 | 19534441 ~ 19537014 (+) | False | smx5 |
| TU34871 | other | upstream | 1173126 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | upstream | 1182571 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU33403 | other | upstream | 3817743 | 16181318 ~ 16182303 (+) | False | mustn1a |
| XR_004580083.1 | other | upstream | 4705692 | 15278827 ~ 15294354 (+) | False | fancd2 |
| XR_003403752.1 | other | downstream | 97779 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU36319 | other | downstream | 1002507 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_004579462.1 | other | downstream | 2585990 | 22598341 ~ 22602338 (+) | False | tmem69 |
| trnaf-gaa_16 | other | downstream | 3463600 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| TU38551 | other | downstream | 4008027 | 24020378 ~ 24021036 (+) | True | G32684 |
