RNA id: TU35757


Basic Information

Item Value
RNA id TU35757
length 2212
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G30288
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20037735 ~ 20039974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CcagaattatttgtttattgcatGACTAAAAGAAACCACTAGTGTAAGTAGTGATGTGACAACTCACCACATGCAGGAAAAACACTTGCAGAACCTTAGTTTGTACAACTAGATCAAAGCACAAAAGGGTCTTGAGAACCAAAATGCAAGGGTTGAAATCTGCTAAAGCAAAGTGCTATAAGAAGGCGGTCAGGTTTAGAACATGGTGTGGATGGGTAAGTTTTAaatttggggaagaaaaaaaaaaaaaaaaaaaaaaaaaagaccatccATGGTGGACATTAGTGTTGTGGCAGGAGCATGTAAAGCTGATTTACTTCTTCACCAAGAGTAGCAGCAGAACAATTTCTATGATGGACAGAAAACATTGTACAGCAAAGTAGCTATACTGTAACTGGGTGGCACTTCATTATACAGGACGCTGATCTATTTTGTCCTGACTGGGAAACAGTTTTGTAAGAAATATACACACTTGAGGATTTCATTGTACACAATCAATATTAAAAAGAGCCATGGCTGGAAATGGAGGGCATAACACACAAGCCACACCATACATTACTTTAACTGACGGTCAACCCAGCGTTAATTACTGACATCTGTAATCCCAAGTGCTAGAGTGTAGATCTAAAACAACCGTCAATGTCGATGTGTCCAATACTTCTGGAGCTCTCTGTATGTTCTGTGCAATCGTGTAACAAATGAGCTGAACATGAACAAGGTGTCATTAACAGAAATACTCCTATGATGACTTCCTGCTTGGTTTGCATTTGCCTTTTGTGAAACTTTTCTAAATTGTGGTACATGCTCTTTAAAAACATTGTGAAGaaaattataatgtttttcCAGACAACAGAACAATAACTTGTGACATTTCAATAGTAAGAACCATGTTATAAATCAAGAGTTGGATACAGTACAGTGAGAACATAGAATTAAGCACGGTGTTGCAAACGTCTCCCAAAAGCAGTGATTATGTCCCTTTCGACTGAATTGTACACTGTGCAGCCAGGATATGAAATTCATTACATACATACTTTCAAGTCAGAATGGAGATGCAAAacaacatgcacatacacacacgcacgcacgcgcacacacacacacacacacgcacgcacgcacacacgcacgcacgcacacacgcacgcacgcacgcacacacacacacacacgcacacacacacgcgcacacacacgcacgcacacacgcacgcacacacgcacgcacacacacgcacacacacaaagaggtgAGATCTTTGACAAGCTGCTTTTACATAAAGTCAAAGGTCATTAGATTTACTGCATGCTATGGTTAAAAAAGGTTGTTATTGTTGGTTGATATGACACTAATCCATTTTTATTTGCAGGTGTGTGATATGTTCACATGAACAATAGTGTTCCTAAACCTTTAATGTTTCCCTCAACATGACGGACACCCACGAATGCACACCGTGGGATTTTGATtattcttaagaaaaaaaattaaaaaataaaaattagaagaATGAAGCTTTatcataatgcataaaatactATACCACACAAGTCGGTTCATGTCTGGTAGAGCGACGCGTGGCGTAGAGTCTGTGTAGTCTTAGGGACTTTCAGTATTTGCTCCTGTCCAGTGTGGCTTTAAAGAGCACAACCAGCCACTGAACTCCTTGTCAAAATGCAAAGACAAGTTCCAGTATAAACATCTGGCTCATTTtggcaaaaacaaaatggataAGGCAGATGTGAATAAAAATCCCGATTCTTGGTCTGTAAAGAAGATTTCAGAATTTCTAGTTGCACAGAAGCAGATGGCAGTTTCGGATCTGGATGCGACTATGAACTCTCAGGTGCGATGTCCCCGCAGGGGGCAGTCTGGTGTGTTAGTGTCGGTGGTCACACAGTGGTGCTCTTATGGCTGCTATTGGAAGGCACCGTGAGCCTCAGACTCTCTCCGTCGTCATCGGCCTCGCTGTCTGTGTCTCCCAGCTGGGGGTGGAGTGTGATGCGGCCGCCACCTTGACAGGGGGTCACTTTAAGCGGTAGCTTCAAGCCGTCTTCATCCGAGGACTGATATGACTCGTCGTCCCCTCCGTAGTGATTGACGATGTGGATCCTATCAAAATTGGTGCGGTCGGGTAAGCCCCTCTGCCCTTTTAAACAGCGGATCTGTAAAGAAACcgtacacacacatcagaactCTCAAAGACAGTGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35746 lncRNA upstream 17788 20019584 ~ 20019947 (+) False LOC113543059
TU35679 lncRNA upstream 119367 19918145 ~ 19918368 (+) True G30224
TU35466 lncRNA upstream 217364 19820142 ~ 19820371 (+) True G30049
TU35416 lncRNA upstream 471712 19565810 ~ 19566023 (+) True G29999
TU35408 lncRNA upstream 479098 19553171 ~ 19558637 (+) True LOC117596099
TU35863 lncRNA downstream 194001 20233975 ~ 20234772 (+) True G30382
TU35929 lncRNA downstream 293769 20333743 ~ 20334121 (+) True G30436
TU35935 lncRNA downstream 320616 20360590 ~ 20361838 (+) True G30442
TU35938 lncRNA downstream 327839 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 332732 20372706 ~ 20373062 (+) True G30448
XM_034310260.1 mRNA upstream 17509 20000046 ~ 20020226 (+) True LOC113543059
XM_034310262.1 mRNA upstream 25384 20000046 ~ 20012351 (+) False LOC113543059
XM_026941073.2 mRNA upstream 34410 20000046 ~ 20003325 (+) False LOC113543059
XM_026920715.2 mRNA upstream 81829 19909283 ~ 19955906 (+) False tp63
XM_026921295.2 mRNA downstream 64230 20104204 ~ 20112519 (+) True rpl5b
XM_026923907.2 mRNA downstream 159551 20199525 ~ 20207753 (+) True atp1b1a
XM_034311045.1 mRNA downstream 205600 20245574 ~ 20249361 (+) False zgc:172121
XM_026926725.2 mRNA downstream 206007 20245981 ~ 20249458 (+) True zgc:172121
XM_034311038.1 mRNA downstream 218847 20258821 ~ 20265493 (+) True si:ch211-201h21.5
TU35395 other upstream 500721 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1210815 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1220260 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 3855432 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 4743381 15278827 ~ 15294354 (+) False fancd2
XR_003403752.1 other downstream 70156 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 974884 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2558367 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3435977 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3980404 24020378 ~ 24021036 (+) True G32684

Expression Profile