RNA id: TU35799


Basic Information

Item Value
RNA id TU35799
length 6742
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G30320
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20104252 ~ 20112518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTCCAATAGATTTATTAGAACAAAATTCTGCAAAATCATATAGTGAGGCTGTTTTAATCCTCCTCTGCAGCCTGAGCGCGGAGGAAGCTGGCTTTCTTCTGAGCAACGCGGTCTTTCCTCTGGGCCAGTGTGAGCTTGGCACGGTTCCATCTCTTCTTGACCTCCCTCTTGGGCTTCTTTTCATGCACTGGGTTTTCACGGATGGCTGCATGGGCTTTCCTGTACATTTCCTCCATCTTAcagaaacaaatgtttttttaaacactttcatTTGCTAAACATCCTGACATTTAAGTTATGAACAGTAAGTGACACCATATGTAAGAATATCAACTAGAACTATAGTTTAAGAAAACACTTACACTCTCGGAGGTGACACCGTTCTTGATGAAGCGAGCGAACTGTTTCTTGTAAgcgtcctcatcctcctccatcAGGAGCCTCATGTATTCAGACACATTCAGTCCCAGAATGTGTTTGCGGTGGACCTCTGCGTTGAACTCTTTGCTTTCAGTATCATAGCCAGGGAAACGCTTGGTGctagaagaaaagagagatgcaTTACAGCTGATTCAGGAACCACAGCCAGAGTCAGTATTAACTAATTGCTATTCAGGAGTGAAAGGATGGGACTTGAAGAAGGAGGATCCAAGCATCATAGCTGTTCTGCTAAAACTGACAAGAACCTATATGGCTCCATTTAGATGATTACTTGCCAGGCCATTTAAAAACcacataaaacaaataaactttCCTTTGCCTTAAGCTGCTTTCAGTCCCGTCTTGAAACTAGCTTACATCAACTGTGCAAATGAAGGACCAACTACAATTTGCTCAGTTTGAAAGGAATCATCATCAAGCAGCAGTAGGACCAACAAAAGAAATAACACCACATTATCAAAACACAAAAGCCAATACACAAAAGCTGCCACTGTTGCAGGAACGTTAGAGAGCATGTACCTGTGAGGGATGGAAAGTCCTCCGTCTACAGCTCCCTTCAGGGCTCCGAACACTTTGTTTCCAGTGGTGGTTCTGGCAAGGCCGGCATCCAGGTAGCAGGTGAAGGCGCTGGGCTGTCCATCAATGCTCTCCACGTTGAATTCATCTCCGGTGATCTCCACCTGGCCCTCGTACACCTTATCCAAGCCAAATTTGTTCAGCAgctaaagaaggaaaaaaaaaaaaaaaccccagtgaAGCTGGTCATTTTTAGCCACCAATAGTTTGAAGAACTTGTAGAGGTTCAGTCAATATAAGAACAATGCACATCACTGCATAGTATGTCACATTAGGTAAAGAATTTGAGAATGGCAGAATGGCCAAATCAAATTagccacaaaaacaaaaaatgactaAATTGTGCTTGTACACAAGGAACAAGTTTGTAAATATCCGGGATAACAATTACACAGTCAGCAATGAGAGAAGCCACGTCCTGTTCTCATACGTGTTTTTACACAGAAACTCAAGCACATTAAAGTAGAAAGGTTTTAAATGTGAAGGGGATAATGAAGTCACAATTTTAACAATACTGCTGCAGCAATCGCTTGGGATGAGCCCTAGCAATACCTCATATGTTCAAAAGAAGTTTTTTCTTATCGCATTGCAATCTCAGTCAGGAGAGGGTGATCGCACAGACATTGATTAAAGGACAGAAAATGACAGCTACATGTATAAAGCCATTTTATATACGCCACGATATCATGcaattttgtttttgaaaaatgagCATTTCAAATGTCAGTTCTTTAATCATCTACCATTAGATGCTGCCGCAAAAATATAACTAAACGATACAATAATGTTTTATGCTCAAACCACGAATGCATATAAAACAAACCATGTGCACAGCATCCGGGTTCATAGGGGAAAAACAACTCCATAGTTCACTTGGCCTGCACACAGAACCACAGAGGAAACGTGTAAAGCATTAGCACAGATGTCACCCAGAAACACTAATCCCATGCAGGCAGGGCTAAGGAcaagaaaaatctagaaaacTGAGCAACTCAGAAATGAAACTTGGCAATTCGTGCTGAAGCTGAAATTCTTTGTTAAAGGTACAGCCAGGATGTGGGTATGAGCCAATTAGCAGCAGaccacagaaaaacacaatgtgaTTAACCACTGaaggcagtggtagctcagtggttaagacgttggactactgatcggaaggtcatgagttcaatccccagcaccaccaagctgccactgctgggcccttgagtaaggcccttaaccctccaCTGCTCAGTtgcatatatattaaaaaaaaaaaaaaaataaatgctctggataagggcgtctaccaaatgccgtaaatgtaaatgattaaacaGACTCCTGAGATGCGCGAACTCGAGGTAAAAAGGTACATTACACCGAACTCACTGTTGTGTCACATCCTGCATAATAGGACTTTTAAGGCAAATGCACGTGTCTCTCTTTTATACTGTTTGGAGGCTAAAGTGTGAACGGCACAAAGCCTAGAAGCCTAAAGAACAGTAATAGGAAGCAGTGCATGGGGTCTTACCCTGCGGGCGAGGAGCAGTCCAGTGCAGTAGGCTGCTGCGTAGTTCGTCAGCCCCACAGTGACGCCATACTTGGGGAGCTCATGAGAGTATGCTGCACACACAATCATATCTCCCTCGATCTTGGCATAGGcgatctgcaaaaaaaaattttatcatTAATGTACATCACTGTACATATGTACACAGTACCAGAAATTGCAAAGTTCTAACACTGTAGTTAGTTCAGTGATCCGTGTCCACAGGTTGTAGTTACACAGCCaatctctcttcctccctctctcggTACTATGTGACCCTTTGGTATGCAGCATTGGAAGCTCAAGGGcaagagaaagacacacacaaaagtgtttGTGCAGTTTGTCTTGCTACCATTCCGTGCAAGACAAAAACACATGGTTGTTCTTATATACGATGACATGAACatagattaaaaatgaaagaaacctGTCATTTGAAACAGCACATTCAGAGAAAAAGATGTCTGATGCTGAAAATCCAACCACTTTGTGGAGTTTTCTCAAGTCAATACTGAGATGAAACTGAGCAAAGACAAGATTCAGGCTAGTTTGCTTGAAATACATCAGGGGCTAGCAAAGAACAGAGAAACGTTGCTCTGTTTGCCATATGGTTCACGATTTATGTGTTATATAATGCCAATGTTAATTCATCACATGTTCAACACAGCGGCAGTTAAAATAATCGAGAGAAAGACCACAGAGTGCTATGGCTAAGAGAAAAGATGTGAAGGCTGCTTAAAACTGCCTACTTCCTAGCAGAAAACTGGCTAATTCAGAGTTTAGCCAGCTGGTGAAATTTATGAAAGAAATGGCATTCCCTTCTTTGAAAATGCTTAAGAAAGACATAAATTACAGGAGCTGTGTATAAAGCTGCTCAGGAAGAGTCTTGAACAAAAGCATGAATGaaggatttaaatttttttttttttgccaatgaCATCTTCCCAAGCATGCTTaccctgaaaataaataaatacccccATATGAGGCATTTAAGGGGGGAATCCtgccccttttttttaaaaaaaaaaaaaataaatttcaggCACTGATTGCACAGAGCATGGCATATTCCTTAACTAAAACAGAGTATCACTGTCTGATTCAAACATCTGCCACCATCCAAGTAAAGCAAACACCATCAACATGCATCATGTCTGCCAAAATATCCAACTACTGAACATGCAGTACTGGAGAATgccaaacacttttttttttttttttaaatgtaaataggTGTTCTCTCAAGAGGAAGGGGAGTTGTATAACAATCATGATGAGGGTTGAAATGATCATTAGGTCAATACTGGAGTCGGTTATCGAACCAGTTTAAGACCTAAATAGTTTTACTGCGCTTCACTGATTCTAATGTACATTAGATGCCTGTATTACTCACATACAGGTGTATAAACCTCTGCATCAAAACTAAACTACTCCCTAGGCATTAATCAAGTGCATCTTTTAAACACGGCAAAGAAACTCAAATCCCCATGGTATGAAACCAAAACAGATTATATATAGTTGCGGAGCTTGAGATTTAACACACTTGTCAACACACATCCAATGCTAACCAATTAGCCGACTTTAGCTACGCTCACCTATATCACAGTCCATTATGTATAACGCATTACTACTGGAGGAAGCCAAAAACCTGATCATGATTAAAATGTGATCACTTAACAGTCCTACAAGAACCGAACACATTTCTGCAATAAGCTACACCCCTCCCACGGGACCAGAGCAGGGCCCAAACAATATTTCTAATTATATCAGGTTGCTAACCGAGCACTTTTAACTACAACTGTCTGTTGTTCTTTAATCACTCAGACATCTCGGAGACTCTGgatatgcagtgtgtgtatttgtcaaATTAATCAAGACATCTCTAGTTTACCAGTTTGTGTAATGTATCCCAAAGCCTATTCCTGCCCCAAGGTGTGTGAACAATCACACTGTGCTATTTTTGTCTGCAACACTTATTCAAGTAGTCATAAAATATGAGGGCAccacgctgttataggaaaatcaacAACAGATTTGTGCGATGCAGCCAGATGCAAAGGTGTTTTCCTGATAACAgtatgtcccaaagtgttttactcctctttaaaattcttttatttattaaagaataacacgtCGTACTTTTTCCACTTATAGTTAGTATagtgtacatttaatgttgcgtaacatctgcaaaacaagttcttATCACTTTTGTTATGaaagctataaacagacattccctcaccagcctcatttttccttactgaccattacaaaacGCTGatactagagactccttccataaatgttaaatatctcCGATTAGACTTTTTCCCCCAAgtcaaataacattttaaattccttttTATTATTCCAGTATACCAGTCCCTCCCTATGATGAgttattatactatactatactatagtataTACTAGTATTGCTAGTATAGTACTATTATATAACATattgtactgtgcaaaagtcttaggaacatgcaaagaaatgctgtagagcaaagatgccttcaaaaataatgaaattaaatgtttctacattaaaataaaatatgaagagcagtaaacagtaataaatgaaacaaagtcaatatttggcgTGACGCTCCTTCGCTTTTTAAAAAcgtagtagtctcaggtacaattagtgcagttttataaggaaatgagctgtaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgtcacatttgcttcttatttttgcagcaaaacccagcagccttcattatgtttttttgtctgaaaagtgtcttatgtaatattctgctttctttactgatatacaaacatttttctgtaacatttaattttctactggaaaactaatgtttggaaatctaaaatgtttttgtactgaatcaataatgtagaagtcataaataaaaatctataacaaagtttgcactaaaaaaaaatagggtacctaagacttttgcacagtactgtaatatACTATAGAATATACTATACACTGAAGGTTGTtggaatgagcacattaattcaaatctcaggtttataggtgttatagaaaattaatgaacaccttctgactcaAAGTTCGAGAATTCAAAAGCGCTGGGGCTTAAGCATGTTAAAGTTCCTCCTAACACCTGTACTGATCATATGTCTAACCTATACAAATACTCAACACCATGTATTACTCATACAAACAGCTGACATTTCCATTTAGGTAGAACAGTATGCATATGAACTCGTACATCATCTAGAATCCAAAGTGACCGAGTTGAGAGTGGCTCCGCAGGACCTTCCACACCACCACGCTCACCTGACAGACGATGTCCCTGTTGGAGAAGCGGACGATCATCCTGTACTTGGGTGTGTTGTATTTGTTCTTGTCTTGGATGACCAGGCGTTTGCGGGCAAAGTAGTCAGTTTTTCCCTCTGtgataaaaaaaggaaaaaataaataaataaaacaccaccACACATTTGTACACAAAAGACTTTTAAAGTTTGTTGATATCAATCCAGAGTCACTTTACAAGTCTcacctctcctcctcctgaaCTTCACCTGGTACCTCTTGAAATAGGCCTTGTTCTTCACTACTTTAACAAATCCCTGTTAAGAAATGTTGCACCATGAGCCTGACATGACTATAGAGCATCTACACAAcaacattacacactgcagAAAAACTTCAACATGGCAGCAGCATAGTGGACTGGAGTTAGCAGGGTTAGCATGTATCCTAGGAGCATAATTGtatgtattgtttttatataagtAACCACATGAAGTGTGattttttcttaatatatgGATATTACAACTGCAGGTTGTAAAGTATCCTGCAGTACTAAGCATAAAGCTGTATTTCTCGGCTCAGGAAAGGTTGGAAACATGCCATATTAGGCCACGTTAGGAGAGAAACACCGGGGTTTGAAAATACAAAATCTAACACCATCTGCCATGTTTTTGACATTTCCTAACAACAATAGCCTCTAGGACAAACATGCGACACCTGATGAAACTTATGAGGAGTGTATTGAGTGTTTTTACTGACCATTTTGCAGACTTTTCAGTCTCCGAAGCCGGAGCCAGGAGTCAAACACCGCTCGGGATTGACTCCGCTGCACTGGAAAAAGGAAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35741 lncRNA downstream 90247 20012425 ~ 20014005 (-) False glmnb
TU35735 lncRNA downstream 118333 19984675 ~ 19985919 (-) True G30270
TU35712 lncRNA downstream 180273 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 190301 19913653 ~ 19913951 (-) True G30246
TU35691 lncRNA downstream 217514 19885468 ~ 19886738 (-) True G30236
XR_004579569.1 lncRNA upstream 84702 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 87015 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 134087 20246605 ~ 20246871 (-) True G30421
TU35911 lncRNA upstream 134593 20247111 ~ 20247337 (-) True G30422
TU35912 lncRNA upstream 135648 20248166 ~ 20248509 (-) True G30423
XM_034313310.1 mRNA downstream 3054 20039757 ~ 20101198 (-) False evi5b
XM_026921238.2 mRNA downstream 3090 20038950 ~ 20101162 (-) True evi5b
XM_034313306.1 mRNA downstream 3092 20039653 ~ 20101160 (-) False evi5b
XM_026921246.2 mRNA downstream 4836 20039653 ~ 20099416 (-) False evi5b
XM_026921252.2 mRNA downstream 15601 20039653 ~ 20088651 (-) False evi5b
XM_026921212.2 mRNA upstream 427 20112945 ~ 20142257 (-) False dipk1ab
XM_026921221.2 mRNA upstream 427 20112945 ~ 20142257 (-) True dipk1ab
XM_026921732.2 mRNA upstream 33867 20146385 ~ 20156159 (-) True zbtb11
XM_026923691.2 mRNA upstream 59610 20172128 ~ 20183294 (-) True dpt
XM_034311036.1 mRNA upstream 95237 20207755 ~ 20246008 (-) False nme7
trnap-cgg_1 other downstream 717739 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 723740 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1287054 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1287922 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1297502 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1351343 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1351343 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1351343 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1351343 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1351343 21463861 ~ 21531428 (-) False raver2

Expression Profile