RNA id: TU35935


Basic Information

Item Value
RNA id TU35935
length 1249
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G30442
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20360590 ~ 20361838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAAACCTTCTCATTTATCATCCATGCTGTTTTGTGTTGTCCTGTGTATGTGGACTAGTTGTAGCTAGATATACTGAGAAGAAACAAAGTAAGTGCATATTTAACTAGCTACCATGTTTTTCCATGGTGTTTCCTTAGTAAGTTGATAAAAAGTGACAACACTCATTTTTTTAGGTAATCTGCCTCCATCTttacaaacaataaattaaaccaTGATCTCAAGTTATgcatcattcattattttacccTAAAGTTTTTGACACTTTCAACTTCACATCACATGCAACGAAAGTCTTAAATGAGCTTTAAGACACAATGCAATAATGCATAACTTTATGTCAAGTGGAACTGTGGAGGACAGTCACCTGCATATTTTGTGGGTCTTTCATAAGACAGTCACATATGGCATTCAGAGATATAGTAAAGATGCAAAAGGAAAGCTTTgatagtgattaaaaaaaaaaacttcttgaTTCTTTGTAAACGACAAGCCATCATGAGGCAAACTATCTCATCTGCTATCATCCCCATAAGGTCTCTGAAATTACTAATTGTTTGTCATGCATTATAAATAAGGCTTTATAGTCTGGTCTGCAGCAAAGTTACAGCAAAcaacagaaaagttttttttttctagtactacatttaagaaaaagctaaaatagGACCTGTGGGTTGTAGCACTGAACAATTTTAAACTATTGCTTTGATCTATCTGACAATCCAGATCTGCATCTGTTTCATCATACAAGAGACACAGGAATGTAACCGTTCTGagttacagactttttttttcatagttcTTCCAGCACATCCCTCCTCCACCCAGCAAGACGTCACTAACTAGTATTTTCTCTAAGGCATACTTCTACAATCTTCCAGGCATTGTGCTCTTCTCTGAAATCATATACTGCCATGCAGTTCTCAGGAATGTAAAGGTGCTCTgcgaaaaaaatgaaaaatctcttCAATAAAATGGTTTACTGCTTCCTCCATTTGAAGGACTTTGGGTTCTTGGCTTATActcattcaaaaatatttgccAGTTCACATGTCCAGGTTGAAGGCCCTCATGAGTAAGTCCAGGTCCCCGATGTTTGCCGCCTGGAAGAGCTCAGGCTGGTCCATCATTGAGAGTGCTATCCTCAATGCTGCCCAGATGTTTCCAGACATGACCTGGTGGGAGAGCTGCCGACTCCTGCTCTTCCTCTGCAGGCTTAATGCTGTCAGGAAGTTGCTGGCGGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35929 lncRNA upstream 26469 20333743 ~ 20334121 (+) True G30436
TU35863 lncRNA upstream 125818 20233975 ~ 20234772 (+) True G30382
TU35759 lncRNA upstream 320616 20037735 ~ 20039974 (+) False G30288
TU35938 lncRNA downstream 5975 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 10868 20372706 ~ 20373062 (+) True G30448
TU35948 lncRNA downstream 18932 20380770 ~ 20380982 (+) True G30455
TU35960 lncRNA downstream 42513 20404351 ~ 20404555 (+) True G30467
TU35979 lncRNA downstream 61889 20423727 ~ 20423933 (+) True G30485
XM_026917400.2 mRNA upstream 939 20335631 ~ 20359651 (+) False usp13
XM_026917375.2 mRNA upstream 939 20335632 ~ 20359651 (+) False usp13
XM_026917393.2 mRNA upstream 939 20335632 ~ 20359651 (+) False usp13
XM_026917366.2 mRNA upstream 939 20335633 ~ 20359651 (+) True usp13
XM_026917384.2 mRNA upstream 939 20335634 ~ 20359651 (+) False usp13
XM_026936757.2 mRNA downstream 105311 20467149 ~ 20472065 (+) True pde6d
XM_026927440.2 mRNA downstream 111433 20473271 ~ 20480074 (+) True phb2b
XM_026927339.2 mRNA downstream 150951 20512789 ~ 20516555 (+) True ptmaa
XM_034310591.1 mRNA downstream 175135 20536973 ~ 20655752 (+) True dlg1
XM_026916910.2 mRNA downstream 175135 20536973 ~ 20655752 (+) False dlg1
XR_003403752.1 other upstream 250365 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 823576 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1533670 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1543115 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4178287 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 653020 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2236503 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3114113 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3658540 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4291152 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile