RNA id: TU36033


Basic Information

Item Value
RNA id TU36033
length 2746
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G30536
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20484465 ~ 20487210 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAAGTGAATGAAAGCGAGAGATTGATTTGCTTTCTCTGttgcatgattaaaaaaaaaatccctttattgatttaattgccttttgtggtggtgttttttctGTCACTAATTTACATGCACCTTATGGAAATCAGCCATTTATCAACACTGAACTTGAGTAAGTTAAATGAAACCatgaacaaaatgacaaaagaaaagATGAACCAAAAaataggtaaggaataaaacacgaaatgatgtgctgttttaggaagaTGATAAACAATGGGgttcttatacaacagcaatttcccaacattattttattaactaaagaatgacacacaATTTTGATCagtgtatagttacatttaatcatgTGGAACATCCAGGACACAAGTTACGTCCTGTTGTCACATGATATAGAGactataaactgtcattccctcactttctctacAAGCGTAATAAGACAGTTTGTCATGTAACAGAAAAAACGGAAAGCACAAAGGCACAGTGGTTAGTTATAAAagaatgttagtgtgttacatGACAAAACATAGTtacataacttttgaaccagaaaaaatgtgatattgTTTGTCATGATCGGCTGAAATAATTATGATTAGGTGAATATGGAATGATTGTGACATGACTAAACAGGTACAATTGCATTCTAGATAAGAGACTGCTAATAAAAGTGGTAAAATGTTTCTTAACTGTTTGTTTACATGAGAAAATATGCATTGATTTGCTTATTTTAAGCAACTTCAACAAAATGACCAAACAGATATATTTGAAAGTGTGTCACTGACTTATCTTAGATCAAGGAACCTGAATGGTTTGCAGATATGAGCAAGATGAGTAAATCGTACCATTACACAGTGGCAGTAGGTCTCCACTGTCTGAGTCTAGGAgagcttcctgttttcatgtACACTGCTTTCCTGTGGCGAGGACAAGGAAACAGGCCTGTGACCAATCATAGCAAACACACAGGCTGTGGTCAGCTCTGAGGCTCCACACTGCAGAAGACTCACAcgtttatatatacagtactgtatattcagGGCTGGACagagtactgagaaattatacttaagtgaaaatatagataatgtgtcagaATCTTACTCGgttaaaagtggaagtaaaaATGTTGCTGCTTTTAAAAGGACACGTATTAAAAACCTTATATTACAACTGTAATGGACTTAAGtgacaaaaatacacaacatttCCGGAGAGACATGATATTTTGGACAAGAGTGCTTTCAGAGATGAGGAAGTCCTTCTGAAGTTGAGTGAGGTTGGCGTTTAGTAGATTTTTACATTagcacatccacatccacaagGCCTTAAAGGAGCTGTTTATAATTAATACTGTCCTCTGCTGACTGTGAGGTGAATTGCAGTTACAGTGAAATTATTGACAAGGCTTGTCATTTCCCACCATCTGACCCCACACTCTTTTGAGTTGTGTTTTAAAGCAGAGCTAATGTTTTTTGTGATTAAtacagaaacacttttaaatttTCATCCCCTGAGAAAACAGGATGTTTTGTATATTAACCGCACATTTATGTTTCCTCACTTTAATGTTTTCAGAGCATGAAAACTGTCATAGAAATGCCATTAATACTGACATTGAAGTGTCACAACACTGGAAATGAGAAATCCTTTATTCTCCTGGTATGTGCTTGACAAAGTGATCTTTAATGTACAGGTGATTGCATTTCTTGCAAGAGTTCCAACTCCTGCACTCATGACTCATGAGTGATAGGTGAGAAAAATcaatctttttaatttttaatactgttttttatttggttATAAATAATAGAGAGACAAAAGAACTCCGCTAAAGGTCAGAGTAAATAAATCGAAAGCATTTTTACACTTGTTTTGACGTTGTGCCACAGTATCACGGTCCTATAAAAACCTCTCTCACCTGTCCTGCTCTTAAAATGCTGTCCATCATCTTGTGTTTTGAAGAGGATCTTGCATTGTAACCTCAGACTACATTACAAATTGGTCATGAACAATGTGCGTCCTCAAGCATGAGATACATCAGCAGTGACCTTTATGataataaactgtttactgTATCTCCACACCACAGAGCTGTCCTCTGACTGTAAAATGATGACATAATCAGCGCGAACGGCTGGACTGTAATGTCGACATGGCTGCCAGGTTCGAACATTCACGCAGGAAATGTTTCAGTTCGGGTTGAGTAGCGCTTGTTCTCCCCAGAGATTCATGCTGAAACAATGATAAATTGAGTTGTCTGTAGGAGGTGCCTTCTAAAACtagctttctttttaaaaaactttcGTCTAAAACTGAGAATTTACGTTAAATTATGTGTCTGAATGATATTTGCAGACATTGGAGAATATGACACAggacagctctctctctctctctttctctgtgtttgtgtgtctggtTTTTTTTATAGGGGGAGCGGGGGGGACCgatgtttgtgtgttgtcaCCTCTCCAATGCAAAACCTAATCtcaactttttttccttttgccgAGGAAAGGCCAAGAGGGTCATCACCAGTTATTATCTTTCTTCCATGTGCATGTTTCTGAGCACTTGTTTTGCAGTAAGTGCGTATGCATGTTGATTACTCATGAGGAGCTGGTAGTGGGTTGAAGTGGGCCAGAGGGTTCAGCTGTTCCTGAAACTCTCACCCTACTAATGGAAACTGGCCTTCACAAATGGCAGCAACACATATGACTTTGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403507.2 lncRNA upstream 87 20480974 ~ 20484378 (+) True LOC113534552
TU35983 lncRNA upstream 55216 20428913 ~ 20429249 (+) True G30489
TU35979 lncRNA upstream 60532 20423727 ~ 20423933 (+) True G30485
TU35960 lncRNA upstream 79910 20404351 ~ 20404555 (+) True G30467
TU35948 lncRNA upstream 103483 20380770 ~ 20380982 (+) True G30455
TU36040 lncRNA downstream 17829 20505039 ~ 20505637 (+) True G30543
TU36042 lncRNA downstream 19113 20506323 ~ 20506646 (+) True G30545
TU36067 lncRNA downstream 88752 20575962 ~ 20658080 (+) False dlg1
TU36141 lncRNA downstream 193190 20680400 ~ 20680770 (+) True G30620
XR_004579663.1 lncRNA downstream 283345 20770555 ~ 20781908 (+) False LOC117599214
XM_026927440.2 mRNA upstream 4391 20473271 ~ 20480074 (+) True phb2b
XM_026936757.2 mRNA upstream 12400 20467149 ~ 20472065 (+) True pde6d
XM_026917393.2 mRNA upstream 124814 20335632 ~ 20359651 (+) False usp13
XM_026927339.2 mRNA downstream 25579 20512789 ~ 20516555 (+) True ptmaa
XM_034310591.1 mRNA downstream 49763 20536973 ~ 20655752 (+) True dlg1
XM_026916910.2 mRNA downstream 49763 20536973 ~ 20655752 (+) False dlg1
XM_026916919.2 mRNA downstream 49763 20536973 ~ 20655752 (+) False dlg1
XM_026916934.2 mRNA downstream 49765 20536975 ~ 20655752 (+) False dlg1
XR_003403752.1 other upstream 374240 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 947451 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1657545 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1666990 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4302162 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 527648 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2111131 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2988741 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3533168 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4165780 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile