RNA id: TU36067


Basic Information

Item Value
RNA id TU36067
length 2358
lncRNA type sense_over
GC content 0.35
exon number 2
gene id dlg1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20536973 ~ 20658080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttttttttttttttttttttttgggtgaatTGAAATAGGAAATGCTCCACTCTCAGAGGGCACGCTTGTGAGCGTGGGCAGAGATGGTCCAGCATCATTAAGACTCGATTCTGGAGCTCTGTGCTTCCAGATTTCAGGGAGAAGTGCTACGCCTAACCAGGGCCTCACTGGGAGATTATATGGTACAGCTTCCTTAATGTTTAAGGCAGGTGACTTTATAAATGGAAAAGATTTTAATGCATACACTTGgattttgtttggattttttttttttcatatagcagtgcataaataaaatgcacttgTGTACGATCACTTGGAGCGACACTTTGCACGTTTTAGTACTAAAAGCATGTTTTGGATGGTTCTGTTCTAGTTAACCTATGTTGATTTTAAGTTTTTCTTAGACATGTACTTGAGCTACATTAACCACAGccacaaaatcttttttccccccattatactgtatactccCTATGATCTTAGAATAGGATCAAAATATTTAACTTATGCAACTATCCAGCTTCTAAACTGCACAAACCGATGGATGTTTTGACTGATGACCTGGCACAAAATATGATCTTGGTTCAAGGATTCCTGGATGTTTTCTGCTGATCAGGGTGTTTATGAGAACATGAATTTGAGGTTTACAGTGGCATGGttgaaaatgttgtttaaaattCAGGTGAATGTGTATTTTAGGACATAAATTCACAATGCAAATCTTAAAAGAATTTACTGTACACTGAGATTTTAACATGTATTTAACCCTGAGTATACTGCCtattttgttataataaaatctatattGAGCTTTACTTAAACTCTAAAAATATGGGAATAATTATctttatattgaatatatatatatatgaaaatatattaatctatataaatataaaagaatatattttcctttattttcaccATCATctctttactttttttacttttttttcttggttttttttcatGGCCCTTAGTGAAGACGTACCTGGGCTGAGTGGGTTTTTCAAGTGCAGTCACTAGCAGCTCATTCTCCTCTGCCCTCTCTTCCATGTGAATCCTGTCTCACGTGGTGTGCATGATTTTAAAAGCAATAGTATTTATAAGACGTGTGTAATCAGTACAAGAGCTGGAATACGCCTTTGCGTTTTCAGCCAGAGTTGTTAAGATGCCTGGTTTGTTGTTGAAAATCAGCAGAAGCTTGTAAACCCTGTCCTTTAGACACAGTGGTACTCTTAGCTGGACAGAGGGTCTCTGAGGCTCTCTCAAACACAAGCCTTTATTTCTCCACTGGAGGGCGTTCTCACAGAATCCCGCTCTCACTTTCATTCTCACTCGGAGATGATTGTTTTCTAAAAGACTGACTCGCTTCCGTTGGACCACAGCTTTCTAACACATTTTTGACGGGACTTTGTAAATATTCTGGTCTGATTCATTCCATTTGTCAAAAGACAAGAAGTGCTAATAAACCaatcacacactgtttttttttttttatgaatgcatCTTTCTTTATGTCATCACAGGATGAGCATCTGTCATTTCTATACAGAGTCAAGTACGTCTGGTGATGAACACACTtagtgtatcttttttttttttttttaaacataacatcAGTTTTGTGGATCGAGAATCTGACgacttatttaataaatgattttattgatGATGAGGAAATTTAGATTTACTTTGTATTACTTATGATCAGGCTGGTTTATTTGCTTTCATATAGGCTACTTGTTTAGAATAATCTAGTACTGATTTAGTAAAAGTATGAAAGTATGAATGCATGAAAAAGAGCGAAAGAATTGGACCAGGGTAACATACTGATATGTAGATGattcactgtaaaatgttaGTTAAGATTAAAGATTAATCCGACACAAGGACATACCTTGTATTTAGGTTGCTTACTCATGAACCTTTGCATATCCTACATTTTCCCCAGACCtagctttatattttatgaatagTCTTCTctcaccatttacatttaatctGTAACTATCCACCTGTATATCTGCTTGCACTGATTTTGTGAACATTTATGATGCTGATCTAAGCAGGCTACCTTCCTCTTATAAAATAATAACCCAGAGTACTTCCATAAGCATGAGTAACTGTATTTTATGGTTCATCTTACTAAAGCAAATGTGGCGGTATGCTGGGGTTGACTTGTGGTTTATGCTGCAACACATTGAATCATATTTACTGAATTAAAATAGATAAGAAAAAAGATAAGAAAAAGTTCAGTTTGTAGGTCCAAAGGTGAATTTGATTTATTCACTGTATTTTCAGATTAATTCAGCACTGGGGGTATAGGAGTTTATTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36042 lncRNA upstream 69316 20506323 ~ 20506646 (+) True G30545
TU36040 lncRNA upstream 70325 20505039 ~ 20505637 (+) True G30543
TU36033 lncRNA upstream 88752 20484465 ~ 20487210 (+) True G30536
XR_003403507.2 lncRNA upstream 91584 20480974 ~ 20484378 (+) True LOC113534552
TU35983 lncRNA upstream 146713 20428913 ~ 20429249 (+) True G30489
TU36141 lncRNA downstream 22320 20680400 ~ 20680770 (+) True G30620
XR_004579663.1 lncRNA downstream 112475 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA downstream 112515 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA downstream 112515 20770595 ~ 20781908 (+) False LOC117599214
TU36246 lncRNA downstream 177407 20835487 ~ 20889710 (+) True G30715
XM_026927339.2 mRNA upstream 59407 20512789 ~ 20516555 (+) True ptmaa
XM_026927440.2 mRNA upstream 95888 20473271 ~ 20480074 (+) True phb2b
XM_026936757.2 mRNA upstream 103897 20467149 ~ 20472065 (+) True pde6d
XM_026917393.2 mRNA upstream 216311 20335632 ~ 20359651 (+) False usp13
XM_026916946.2 mRNA downstream 739 20658819 ~ 20671746 (+) True meltf
XM_026921723.2 mRNA downstream 16321 20674401 ~ 20683491 (+) True lrrc40
XM_034312229.1 mRNA downstream 166260 20824340 ~ 20868260 (+) True shroom2a
XM_034312242.1 mRNA downstream 173411 20831491 ~ 20868260 (+) False shroom2a
XM_034312244.1 mRNA downstream 173411 20831491 ~ 20868260 (+) False shroom2a
XR_003403752.1 other upstream 465737 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1038948 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1749042 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1758487 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4393659 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 356778 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1940261 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2817871 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3362298 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3994910 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU66905 True 2598 lncRNA 0.39 3 NC_056704.1 13968313 ~ 13972094 (-)
mexican tetra (Astyanax mexicanus) TU66905 True 4158 lncRNA 0.38 3 NC_035902.1 3320987 ~ 3430058 (-)