RNA id: XM_026916934.2


Basic Information

Item Value
RNA id XM_026916934.2
length 3051
RNA type mRNA
GC content 0.49
exon number 23
gene id dlg1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20536973 ~ 20658080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATTTTGGAGGAAAGTTTGGATTTTGAGGAGGCTGCTAAGAGGGCAGCAGAGGAGGGGCAGAGCCCGAGAAGTTTGCCGCTGGACCGTGTAGGAGTCGAGGGAGCGAGTAAAGGCGGATTTCTGAGGACAAGCAACTTATCTGAGTGTGAAAAACTTTGCGTGGTATTCCTGGACGCGTTTACTTACTGAACAGCTTCAGTCCAAGAAGTTTGGCAAGAGTGTGTTTTACTGCATGTTATCATACACGCAAACTGTAACACCTCTAttccattcattttcattttctaagGTTTATCAGTCTGGTTTTAGCAAGTCTTGACTGGACTTCTTGCTTTCACTCAAGGATTTATTTTTCAGGATTATTAAGGATTTACTCTTTCAAATGGTTCAGACAAGTCTTTGCAACCTTTTTACTGAGTGTTTgacctgatcctgatcctgatccttGGATGTGATCATGCCGGTGAGAAAGAAAGATACACAGCGAGCGCTGGAACTCCTTGAAGAATACAGGTCAAAGCTGAATCAGCCAGAGGATGCCCAGCTTCGACACTCCATCGACAGAGTTATCAGCGTATTTCAGAGCTCGCTCTTCCATGCCCTGATAGATATCCAGGAATTTTATGAAGTAACCATACAGGAGAAACAGACTGAGTCTACAGAGCCCATAAAACCAGCAGAGCCTTGTACTCCTGCTAAAAATGTGACATCAGAAACCCGCACTAGTAAGAAATACAGATATCAAGATGAGGACACCACCTCTCCTCCAGAACACGGCTCGACTCGCCTGCCCGGGGACGTTCAGCCTCCTGAGCTGGTGCAGGTGTCGGAGAAAAACATCTCCCAGATCGAGAATGTCCATGGCTTTGTCTCTCATTCACACATCTCCCCTATGAAGgcAAGCCCGGCCCCGGTGTTGGTGAACACAGACAGCCTTGACACTTCTCCCTATGTGAGCCCATATGTAAACGGAACAGAAGCTGattatgaatatgaagaaaTTACGCTTGAACGAGGAAACTCTGGTCTGGGTTTCAGTATTGCAGGCGGCACCGATAACCCCCACATCGGTGAAGACCCAAGCATTTTTATCACCAAGATTATCCCGGGTGGAGCTGCTGCTCAGGACGGCAGGCTCAGGGTAAATGACTGTATCCTGCGTGTAAACGATGTGAACGTGAGGGACGTCACTCACAGTAGAGCTGTGGAGGCGCTGAAGGAGGCAGGCTGCATCGTGAGGCTATATGTCCGAAGAAGAAAGCCCAGCGCGGAGAAAATCGTGGACATAAAGCTTGTCAAAGGTCCCAAAGGTTTAGGCTTCAGTATAGCTGGTGGAGTGGGAAACCAGCACATTCCTGGAGACAATAGTATCTATGTCACCAAAATCATTGAGGGAGGAGCTGCCCACAAAGATGGACGACTCCAGATTGGGGATAAACTTATTGCTGTAAATGTTGTTTGCCTTGAAGAGGTGACTCATGAGGATGCTGTGGCAGCCTTGAAAAACACGAGTGATGTAGTGTTCTTAAAAGTGGCAAAACCCACCAGTGTGTTCATGAACGACAGCTATGCTCCTCCTGACGTCACcaactcctATTCCCAGCACATGGAGAATCATATCAGCTCCCCAAGTTATCTGAGCCAGCCCACAACCCCAGCCACGCCTTCACGCTTCTCCCCCATCTCCAGAGGCTTGCTGGGAGATGAAGAGATCACAAGGGAGCCTCGGAAGGTGGTGCTACACCGCGGCTCCACAGGGCTTGGCTTCAACATTGTGGGtggagaggatggagagggCATCTTCATCTCCTTCATCCTGGCTGGAGGACCTGCCGATCTCTGTGGAGAACTGAGGAAGGGAGACCGCATCATCTCTgtgaaTGGAGTGGATCTCCGCAGTGCAACTCATGAACAGGCAGCTGCTGCTCTGAAAAATGCTGGTCAAACCGTCACCTTAGTGGCTCAGTACAGACCAGAGGAGTACAGCCGTTTTGAAGCTAAAATCCATGATCTCCGGGAGCAGATGATGAACAGCAGTATCAGTTCAGGTTCCGGCTCGCTCCGCACCAGCCAGAAGAGGACGCTCTACATCAGAGCCCTGTTCGACTATGACAGGACGAAGGATTCTGGCCTCCCGAGTCAAGGATTGAACTTCCACTTCGGGGACATCCTGCACGTGCTGAACGCTTCAGATGATGAGTGGTGGCAGGCACGCAATGTCACCGCAGATGGAGAAGTGGAAGAGATCGGAGTCATTCCCAGCAAGAGGAGggtggagagaaaagagagggcCAGGTTAAAGACGGTCAAATTCAACTCCAAGTCTCGGGACAAAGAGGACCTGAGTGACGACAAAGGCTTGAGTGGACAGGAAGAGTACGTTCTATCATATGAGCCTGTGATTCAACAGGAAGTGAATTATACTCGTCCCGTGATTGTTCTGGGCCCTATGAAGGACCGGATCAACGATGACCTGATATCAGAGTTTCCTCATAAGTTTGGATCCTGTGTCCCTCACACAACCAGATCAAAGCGAGACTATGAGGTTGATGGCAGAGATTATCACTTTGTCGTGTCTCGAGAGCAAATGGAGAAAGACATCCAGGATCACAAGTTCATAGAGGCGGGCCAGTACAACAATCATCTGTATGGCACAAGTGTACAATCAGTGCGAGAGGTTGCAGAAAAGGGTAAACACTGCATCTTGGACGTCTCCGGCAATGCTATCAGACGACTCCAGCTAGCACAGCTCTACCCAATTGCTGTATTTGTCAAACCAAAATCAgtggaaaatattttAGAGATGAATAAGAGGCTGACAGAGGAGCAGGCCAAGAAGATGTTTGACAGAGCTATGAAGCTGGAACAGGAGTTTACAGAGCACTTCACTTCCATTGTACAAGGGGACACCCTGGAGGAGATCTACAACCAGGTTAAACAAATCATAGAAGATCAGTCTGGACCATACATCTGGGTGCCAGCCAAGGAGAAATTGTGAGATGGCTGAAGTCGGagaaaccatttttttcccccccttttttcctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36042 lncRNA upstream 30329 20506323 ~ 20506646 (+) True G30545
TU36040 lncRNA upstream 31338 20505039 ~ 20505637 (+) True G30543
TU36033 lncRNA upstream 49765 20484465 ~ 20487210 (+) True G30536
XR_003403507.2 lncRNA upstream 52597 20480974 ~ 20484378 (+) True LOC113534552
TU35983 lncRNA upstream 107726 20428913 ~ 20429249 (+) True G30489
TU36141 lncRNA downstream 24648 20680400 ~ 20680770 (+) True G30620
XR_004579663.1 lncRNA downstream 114803 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA downstream 114843 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA downstream 114843 20770595 ~ 20781908 (+) False LOC117599214
TU36246 lncRNA downstream 179735 20835487 ~ 20889710 (+) True G30715
XM_026927339.2 mRNA upstream 20420 20512789 ~ 20516555 (+) True ptmaa
XM_026927440.2 mRNA upstream 56901 20473271 ~ 20480074 (+) True phb2b
XM_026936757.2 mRNA upstream 64910 20467149 ~ 20472065 (+) True pde6d
XM_026917366.2 mRNA upstream 177324 20335633 ~ 20359651 (+) True usp13
XM_026916946.2 mRNA downstream 3067 20658819 ~ 20671746 (+) True meltf
XM_026921723.2 mRNA downstream 18649 20674401 ~ 20683491 (+) True lrrc40
XM_034312229.1 mRNA downstream 168588 20824340 ~ 20868260 (+) True shroom2a
XM_034312242.1 mRNA downstream 175739 20831491 ~ 20868260 (+) False shroom2a
XM_034312244.1 mRNA downstream 175739 20831491 ~ 20868260 (+) False shroom2a
XR_003403752.1 other upstream 426750 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 999961 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1710055 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1719500 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4354672 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 359106 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1942589 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2820199 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3364626 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3997238 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile