RNA id: TU36141


Basic Information

Item Value
RNA id TU36141
length 313
lncRNA type intronic
GC content 0.41
exon number 2
gene id G30620
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20680400 ~ 20680770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgatagGTTAGTTCCCTCACCTTTTGCCCCGagtccctgtgtaggataagcagtacagaaaatggatgggtagatggatatatatatatatatgaccattaaaaatatgtaaatatttatactttattcatACCTGCAACTAGTTTTGTAGCCGTGTTTTACGTAATCTATGTGGAAAGCCTGCACAAGTttagaaagttaataaaaaccatttctgcattgttttggtgaaatatatttatggtatttATTAGTAGAGTAGAGGTGCCAGAGGTGTCTTTTGgttgtttgccagaattcaacGCGTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36067 lncRNA upstream 22320 20575962 ~ 20658080 (+) False dlg1
TU36042 lncRNA upstream 173754 20506323 ~ 20506646 (+) True G30545
TU36040 lncRNA upstream 174763 20505039 ~ 20505637 (+) True G30543
TU36033 lncRNA upstream 193190 20484465 ~ 20487210 (+) True G30536
XR_003403507.2 lncRNA upstream 196022 20480974 ~ 20484378 (+) True LOC113534552
XR_004579663.1 lncRNA downstream 89785 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA downstream 89825 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA downstream 89825 20770595 ~ 20781908 (+) False LOC117599214
TU36246 lncRNA downstream 154717 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA downstream 167721 20848491 ~ 20851676 (+) True G30721
XM_026916946.2 mRNA upstream 8654 20658819 ~ 20671746 (+) True meltf
XM_034310591.1 mRNA upstream 24648 20536973 ~ 20655752 (+) True dlg1
XM_026916910.2 mRNA upstream 24648 20536973 ~ 20655752 (+) False dlg1
XM_026916919.2 mRNA upstream 24648 20536973 ~ 20655752 (+) False dlg1
XM_026916934.2 mRNA upstream 24648 20536975 ~ 20655752 (+) False dlg1
XM_034312229.1 mRNA downstream 143570 20824340 ~ 20868260 (+) True shroom2a
XM_034312242.1 mRNA downstream 150721 20831491 ~ 20868260 (+) False shroom2a
XM_034312244.1 mRNA downstream 150721 20831491 ~ 20868260 (+) False shroom2a
XM_034312234.1 mRNA downstream 173710 20854480 ~ 20868260 (+) False shroom2a
XM_034312249.1 mRNA downstream 173711 20854481 ~ 20868260 (+) False shroom2a
XR_003403752.1 other upstream 570175 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1143386 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1853480 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1862925 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4498097 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 334088 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1917571 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2795181 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3339608 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3972220 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile