RNA id: TU36280



Basic Information


Item Value
RNA id TU36280
length 210
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G30747
representative True

Chromosome Information


Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20963432 ~ 20963641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


gtttttttccactgatgtCCAACCTGTAGTGTCTCTCTCCTCCAACATAAAAATACTGCCCAGTACCAAATTTAATAATCTCTTCCCACTCTATGAGACACATTAGTTGAACAGTTGCAAAAATTCAAGGCAAACGAAGGCTGCACCATTTCAGGACAGGCTGCTGATTTAGTCCAATAAATTACTAcaaatttagacttttttttgcGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36246 lncRNA upstream 73722 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 111756 20848491 ~ 20851676 (+) True G30721
XR_004579663.1 lncRNA upstream 181524 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA upstream 181524 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA upstream 181524 20770595 ~ 20781908 (+) False LOC117599214
TU36341 lncRNA downstream 129973 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 421365 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 438601 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 439832 21403473 ~ 21406386 (+) False LOC113526220
TU37020 lncRNA downstream 645592 21609233 ~ 21612878 (+) True G31384
XM_034314801.1 mRNA upstream 14795 20894023 ~ 20948637 (+) False wwc3
XM_034314792.1 mRNA upstream 14795 20894024 ~ 20948637 (+) True wwc3
XM_034314817.1 mRNA upstream 14795 20894024 ~ 20948637 (+) False wwc3
XM_034314798.1 mRNA upstream 14795 20894025 ~ 20948637 (+) False wwc3
XM_034314804.1 mRNA upstream 14795 20894025 ~ 20948637 (+) False wwc3
XM_026913045.2 mRNA downstream 18891 20982532 ~ 20988867 (+) True ttc22
XM_026918107.2 mRNA downstream 35842 20999483 ~ 21011730 (+) True wdr78
XM_026918093.2 mRNA downstream 51197 21014838 ~ 21017867 (+) True insl5a
XM_026923022.2 mRNA downstream 445113 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 445113 21408754 ~ 21448083 (+) False jak1
XR_003403752.1 other upstream 853207 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1426418 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2136512 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2145957 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4781129 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 51217 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1634700 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2512310 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3056737 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3689349 24652990 ~ 24653965 (+) False LOC117598985