RNA id: TU36319


Basic Information

Item Value
RNA id TU36319
length 781
RNA type TUCP
GC content 0.38
exon number 2
gene id insl5a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21014838 ~ 21017867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCCAGCCTTGAAGTTAGTGAAGAAGCAGAGAACAAGAAGGGAAGAAGGACGAACGTGTAGGAGCCACTATGAGAGCAAGTTATCGGCTCCCTCTGGTGCCCTTGTTGCTGCTGTGGGCCGTTTGCAGCATGGTACAGGTGCAGGCGGAGGTCAAGGCAGTCAAGCTCTGCGGCCGTGAGTTCATCCGGGCCGTGGTCTACACCTGCGGAGGCTCCAGGTGGAGAAGGCTGCTTACACCACAAAATGATGtGTTTTCTCTTGCAGAGCAGAGCAGTGCTGAGGAGCTGAGTGAGAGCACAGGGTCTGATCTGTCAACACGAGACCTGAACCCCATGATGACCAACGTATGCTGTCAGGTGGGCTGCCGAAAGAGTGACCTCTCTCTCCTGTGCTGAGGACCAGACACACTCTCTTCAGAAGTTCACAAgctctacagtgtgtgtgtgcgtgagagagagagatcttccGGGCATTATTTAAGATCAGCTGTCTTTCTGTTCATGGTATCAAACATAATTGGTGAATCAGTAAGTGTGCCCATACAGTAAGACATAAAAACAAGCATTATGCATCTTGCTTTGTTCAAATGCTGTGTTAAATGTTATAGGAGTGCTTGgattgtggagaaaaaaaaatacaatgacaGGTTTTGTGTTCAATTCAATGTCAAGTGTCTACAAGAGTGTTGAAGAACCATAAAGTTTGATTGTAAtgtatattttgacattttttgtcTAATAAATGTTACAGCATAATTATATTTGTCTATGTAGTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36280 lncRNA upstream 51217 20963432 ~ 20963641 (+) True G30747
TU36246 lncRNA upstream 125148 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 163182 20848491 ~ 20851676 (+) True G30721
XR_004579663.1 lncRNA upstream 232950 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA upstream 232950 20770595 ~ 20781908 (+) True LOC117599214
TU36341 lncRNA downstream 76167 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 367559 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 384795 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 386026 21403473 ~ 21406386 (+) False LOC113526220
TU37020 lncRNA downstream 591786 21609233 ~ 21612878 (+) True G31384
XM_026918107.2 mRNA upstream 3128 20999483 ~ 21011730 (+) True wdr78
XM_026913045.2 mRNA upstream 25991 20982532 ~ 20988867 (+) True ttc22
XM_034314801.1 mRNA upstream 66221 20894023 ~ 20948637 (+) False wwc3
XM_034314792.1 mRNA upstream 66221 20894024 ~ 20948637 (+) True wwc3
XM_034314817.1 mRNA upstream 66221 20894024 ~ 20948637 (+) False wwc3
XM_026923022.2 mRNA downstream 391307 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 391307 21408754 ~ 21448083 (+) False jak1
XM_034314527.1 mRNA downstream 766345 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_034313266.1 mRNA downstream 952527 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 1031069 22048516 ~ 22101105 (+) True kank4
XR_003403752.1 other upstream 904633 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1477844 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2187938 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2197383 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4832555 16181318 ~ 16182303 (+) False mustn1a
XR_004579462.1 other downstream 1580894 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2458504 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3002931 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3635543 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 3635738 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile