RNA id: XM_026918093.2


Basic Information

Item Value
RNA id XM_026918093.2
length 1221
RNA type mRNA
GC content 0.43
exon number 2
gene id insl5a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21014838 ~ 21017867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCACATTTCACAGATCAGCTTCCAGCCTTGAAGTTAGTGAAGAAGCAGAGAACAAGAAGGGAAGAAGGACGAACGTGTAGGAGCCACTATGAGAGCAAGTTATCGGCTCCCTCTGGTGCCCTTGTTGCTGCTGTGGGCCGTTTGCAGCATGGTACAGGTGCAGGCGGAGGTCAAGGCAGTCAAGCTCTGCGGCCGTGAGTTCATCCGGGCCGTGGTCTACACCTGCGGAGGCTCCAGGTGGAGAAGGCTGCTTACACCACAAAATGATGtGTTTTCTCTTGCAGAGCAGAGCAGTGCTGAGGAGCTGAGTGAGAGCACAGGGTCTGATCTGTCAACACGAGACCTGAACCCCATGATGACCAACGTATGCTGTCAGGTGGGCTGCCGAAAGAGTGACCTCTCTCTCCTGTGCTGAGGACCAGACACACTCTCTTCAGAAGTTCACAAgctctacagtgtgtgtgtgcgtgagagagagagatcttccGGGCATTATTTAAGATCAGCTGTCTTTCTGTTCATGGTATCAAACATAATTGGTGAATCAGTAAGTGTGCCCATACAGTAAGACATAAAAACAAGCATTATGCATCTTGCTTTGTTCAAATGCTGTGTTAAATGTTATAGGAGTGCTTGgattgtggagaaaaaaaaatacaatgacaGGTTTTGTGTTCAATTCAATGTCAAGTGTCTACAAGAGTGTTGAAGAACCATAAAGTTTGATTGTAAtgtatattttgacattttttgtcTAATAAATGTTACAGCATAATTATATTTGTCTATGTAGTTTTCTCAGGTTATGTATTACATAAAATCTTAAATGACTAGTTCATGAATTGTTGTATACACTTATGTCCTTgattgaaatataaaatattatatgtaGGTAataaatttcacacattttgtaACATAGGTTCTGAGCTTGGATTATTGTttatgtggagttttgcatgttttccctgcGTCCGTTTCCTGCGTTTCACTCAGGTTCCCTGTTATCCTCCTGCCTCCCAAACACAAGCTGGTAGATTAATTtcctatgctaaattgcccctatgtgtgaatgagtgtgtgcatagtgccATGCGGTGGActtgtgtattcccacctcatattcagtgttcccaggataggctctggattcaccatgATCGTAACCAGGAGAAAGTgctgactgaagatgaatgaaataaatgaatgcattggTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36280 lncRNA upstream 51197 20963432 ~ 20963641 (+) True G30747
TU36246 lncRNA upstream 125128 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 163162 20848491 ~ 20851676 (+) True G30721
XR_004579661.1 lncRNA upstream 232930 20770595 ~ 20781908 (+) True LOC117599214
TU36341 lncRNA downstream 75747 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 367139 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 384375 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 385606 21403473 ~ 21406386 (+) False LOC113526220
TU37020 lncRNA downstream 591366 21609233 ~ 21612878 (+) True G31384
XM_026918107.2 mRNA upstream 3108 20999483 ~ 21011730 (+) True wdr78
XM_026913045.2 mRNA upstream 25971 20982532 ~ 20988867 (+) True ttc22
XM_034314817.1 mRNA upstream 66201 20894024 ~ 20948637 (+) False wwc3
XM_026923022.2 mRNA downstream 390887 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 390887 21408754 ~ 21448083 (+) False jak1
XM_034314527.1 mRNA downstream 765925 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_034313266.1 mRNA downstream 952107 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 1030649 22048516 ~ 22101105 (+) True kank4
XR_003403752.1 other upstream 904613 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1477824 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2187918 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2197363 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4832535 16181318 ~ 16182303 (+) False mustn1a
XR_004579462.1 other downstream 1580474 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2458084 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3002511 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3635123 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 3635318 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile