RNA id: TU36341


Basic Information

Item Value
RNA id TU36341
length 203
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G30791
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21093614 ~ 21093816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAatcggagaacccagaggaaacccatgtggacgaGAGAACATGCTAAACTTCACATAGgcagtaatctgagctcagtATCAAACTGAGAACCTTGGACTGTGAGGTGGAAATGCAACCTGCTGCACCAGCATgaaattttttcttcttgttgaGCTTCATTTTGCTGATATAGACACTGCGTTTCTTGTTTATGCTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36280 lncRNA upstream 129973 20963432 ~ 20963641 (+) True G30747
TU36246 lncRNA upstream 203904 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 241938 20848491 ~ 20851676 (+) True G30721
XR_004579663.1 lncRNA upstream 311706 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA upstream 311706 20770595 ~ 20781908 (+) True LOC117599214
TU36879 lncRNA downstream 291190 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 308426 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 309657 21403473 ~ 21406386 (+) False LOC113526220
TU37020 lncRNA downstream 515417 21609233 ~ 21612878 (+) True G31384
XR_004580201.1 lncRNA downstream 542368 21636184 ~ 21642350 (+) True LOC117599889
XM_026918093.2 mRNA upstream 75747 21014838 ~ 21017867 (+) True insl5a
XM_026918107.2 mRNA upstream 81884 20999483 ~ 21011730 (+) True wdr78
XM_026913045.2 mRNA upstream 104747 20982532 ~ 20988867 (+) True ttc22
XM_034314792.1 mRNA upstream 144977 20894024 ~ 20948637 (+) True wwc3
XM_026923022.2 mRNA downstream 314938 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 314938 21408754 ~ 21448083 (+) False jak1
XM_034314527.1 mRNA downstream 689976 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_034313266.1 mRNA downstream 876158 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 954700 22048516 ~ 22101105 (+) True kank4
TU36319 other upstream 76167 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 983389 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1556600 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2266694 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2276139 18817402 ~ 18817475 (+) True trnai-aau
XR_004579462.1 other downstream 1504525 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2382135 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 2926562 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3559174 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 3559369 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile