RNA id: TU37101


Basic Information

Item Value
RNA id TU37101
length 652
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G31454
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21389477 ~ 21412173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaccgaCCACATATTCCCCTTCTGCAGTGTATGTTTTAGACTGTTTAAGGTGACAGTAAAAGTCTGAATAAGTTGCCTATATTGCTCCAGTCCTCTAGATAAATGAATGCAAGTAAACAGGCATGTTTTAGTTCACACTCTGGAGCATTAGGACACGTGGCAGTGTTTACCTTGTGCCTCGTTTACCATTTATCCTTGTCCTgccattcattatttattctttataccacaaaataaacattaacatgcAGGTTAGTCCCCGCATCAGGGCGGTTGTTGGAACAGTGGGACAGCAGTTAAAGCTTCGCGCTACTAatcggaaggttgtgagttcaaatcccagcactaacGAGCTGCCGCTGTTATGCTCTTCAGCAAGACTCTTAATCCCTGTGACAATTGTATCTTAtctcatttgtaagtcactctggataaaggcatcaaccaaatgagtaaaatggaaataaagcagggaaaaatgtgtattataaactttaattatctttattacgatttattgtcatttttcttCAACACCGCAGTGATGGTTTGTCATTTAAGCGTGCATTTTAGGTCTTATTTTAATGACACAGACTGCTGTTTAAACACGTACATGCACGAactttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36922 lncRNA downstream 4201 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 106252 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 323739 21062894 ~ 21065738 (-) True G31094
TU36669 lncRNA downstream 429086 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 732094 20655352 ~ 20657383 (-) True G30899
TU37132 lncRNA upstream 120075 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 157683 21569856 ~ 21612822 (-) True G31486
TU37141 lncRNA upstream 190371 21602544 ~ 21603863 (-) True G31489
TU37143 lncRNA upstream 195223 21607396 ~ 21609167 (-) True G31491
TU37144 lncRNA upstream 203148 21615321 ~ 21615675 (-) True G31492
XM_026930465.2 mRNA downstream 10703 21342709 ~ 21378774 (-) False dnajc6
XM_026930457.2 mRNA downstream 10703 21342709 ~ 21378774 (-) True dnajc6
XM_034314869.1 mRNA downstream 11165 21342709 ~ 21378312 (-) False dnajc6
XM_026930474.2 mRNA downstream 11165 21342709 ~ 21378312 (-) False dnajc6
XM_034310139.1 mRNA downstream 71654 21283025 ~ 21317823 (-) True lepr
XM_026919886.2 mRNA upstream 37373 21449546 ~ 21531427 (-) True raver2
XM_034298204.1 mRNA upstream 126826 21538999 ~ 21579079 (-) True cachd1
XM_026922851.2 mRNA upstream 222394 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 352742 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 384387 21796560 ~ 21815679 (-) True alg6
trnap-cgg_1 other downstream 2002964 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 2008965 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2572279 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2573147 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2582727 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 51688 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 51688 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 51688 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 51688 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 51688 21463861 ~ 21531428 (-) False raver2

Expression Profile