RNA id: TU37141



Basic Information


Item Value
RNA id TU37141
length 1300
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G31489
representative True

Chromosome Information


Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21602544 ~ 21603863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTCGGATGATGTCTGACCTCCGACCCCGTCTCTCTGATGGGGAGATGAAAGAGCTCTGACTCGGAGGTCAGTAATTGGCAGAAACGCCAGCGCTGCCTTTGTGTCTCGAGAGAGAAAAACGGTGATCTCAACAGGCAGCAGATGCGTGGCTGTAGGTTTGCCGGGTGGCAGTGTGTGATGGTGGCTTTATTCATGCAGCTCGACCGGTAAAGCAACACCTGCTTTAACAGAGAAAAAGGAGCTGGGCGTTCCAAGACACTACATTTCTCCTGGCTGGTGTGTAAACATGAATGTGGCCATGAATGTAATTTTGTGTGGGTGTAAACTGATGAGTGTTGCCAAAGatattcatgtttgtttatttatgtccCCCATAAGGCCGGTGAAGACACTGACGTGTGTTTTAGATAAACTGACTAACCCTGGGGTGGGATCGCATGAGCTATGTGGAAATATTTACTGCCCCGTTTACTTCttatggaagtgtgtgtgtgtgtgaggaggtgttgtatgaaaaaaaaggtgttgaGCATTGAGTGTTTATAGTACCTGTCTGCACTCTGcttggcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgcgcactggTCCAGTGCCAGCATGTCTGCACAGGAGTCTTGAAGACGGCTTACTGCTTGTCTGATTGCTGCTGAAAACAAAATCGCATGTAATGAGCGCTTGTAGAGAGACAGTGCACCAGAGCATTGTGGGAAAGCAGGTGGCCTCAGGTGCCTCTGTGTGTGCGGATCGAAGCTCTTGTGAGATTATTGTTGaaggctgtttgtgtgtgtgtatttttgaatatataatttttttttaaaaatgtttttttttttttggtttcatatttttattgatgttttttaaatgatgaaaaatgaataattttaatgCCATGGGCCTGCCAAATGAGTGCTGCTCCTTTGTGCCTTTGCTGATGCATAAATAAAGATGAGGTTTGCTTTCTCCGATTGATGTAGCTCCTCTCTCCGAGCCGTGTTGTGTGCTGATACGAGTTTGTAACTCGGCTCTGTTTGATGTGCTGTCTTCAGAACATCAGTACTCCAGCTCTGCATTATTGATGGGTTTATGTCAGTGTTCATGCGCCATGCATTTTAATTCAGTCTCACCAACTGACATTTAGTGCTGCAGTGTTACTGACTATGTACTGTAAGTAGGGGGTTGCAGTTTGAAATTTTCACAATATGATAACCTGGTCTAAAACTATCAcagtattaatcaatcattcaaaaatacacacagtttaTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37132 lncRNA downstream 70085 21532248 ~ 21532459 (-) True G31481
TU37101 lncRNA downstream 190371 21389477 ~ 21412173 (-) True G31454
TU36922 lncRNA downstream 217268 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 319319 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 536806 21062894 ~ 21065738 (-) True G31094
TU37143 lncRNA upstream 3533 21607396 ~ 21609167 (-) True G31491
TU37144 lncRNA upstream 11458 21615321 ~ 21615675 (-) True G31492
TU37369 lncRNA upstream 500335 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 526562 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 569488 22173351 ~ 22175740 (-) True LOC117599244
XM_034298204.1 mRNA downstream 23465 21538999 ~ 21579079 (-) True cachd1
XM_026919886.2 mRNA downstream 71117 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 201616 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 201617 21386910 ~ 21400927 (-) False ak4
XM_034314869.1 mRNA downstream 224232 21342709 ~ 21378312 (-) False dnajc6
XM_026922851.2 mRNA upstream 30704 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 161052 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 192697 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 218879 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 353672 21957535 ~ 21968209 (-) True atg4c
XR_004580163.1 other downstream 71116 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 2012294 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4296867 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4477286 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 5026966 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 5035970 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile