RNA id: TU37143


Basic Information

Item Value
RNA id TU37143
length 1606
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G31491
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21607396 ~ 21609167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagaaccattgtttgcactgtttgctatagatggtgctgttactatttttgcaccatagtattatttatttttttatctacaTTTTCCAACgtATGACATAATGGCATTTAAGAACCTGCGTAGTGCTGTATATACTCAATTTGAGATTCAGTCACAGAAAAAGATTGATTCCTAAaattcaactcaattttattgtcattatacCAATACAAGTATTGTACAGTATAACCAAACACTATCGGGCTACTTCTCTGGTGCAAGAAAGTGGACAAAGACAGTAGACAAGTGACGGACAATAGGTGCATAGACAGTGGATACGAGATATATGCAATGAACAATAACTGGATCAAAAGGAATAGGTAGAATTTTAACATGCAAActatatttaagcaataaatATGAAGCCCTTAAGTTATCAAGAAGAGCTTTTACTAGTGGAGTGAAAGGTGGTGACAGGAGGCTCACAAAAATTTCAGCAATTTAAGTAatgtatacaaaatacaaaatgaaattaaagatGGTTTGGAGCAATATTCTGTCAGGGGACCAAGGGTTCCTAGCTACACCCCTACCAATAAGTGTCTGTTGGAAATGAAGTACTTAGATGCAAGGACAGATACggtgtttgtttattatgtAGTGAGATAAATCACTTTTATATAGAattaagaaaatgtgaaaataaaacttgCCATATATTATTGATTTCTTGAGAGTGTTTATTGAGGCTTAACAGGGGTCATTAGGCTCAAAAGTTAGAAATGGCATATTCATAGATTTGTGATGGACAGTTAAGGAAGACATAAGGTCTCAAATATATAGcttatatatgtaaaattataaaaattcatCCTGTGTGTACTATTGTATCTGATTCAGCATTTGCCACAGGACATGTTAAGAACATTTAGTACCTGGACCCACAGAAAAGCCCTGGGAAAGGTTTAATACAGGCTATACTGCAATATGTTTGGTTAGTGGTTCAGTTTCTAGAGGGTAGTTGGAATGTTTAGTAATGAGAAACCTATTATACAATCAGCAATCACCACAGTATTTGATATTGTATCATGGTCTATAGCAAAGCCTGGCTTCATTTAGGAATATCGTAAGGATTATATAAAGCAAGGAATCTTGAAATGAATAGGATTAATTGTAAAAGTCCCATTTTTATGTTTGATGTTTGtcataataaaaatgtctgaatGTCATTGTTTGACTCCATGATCTTGAACTTTGTGTTGACTGGTCTTAAGGCAGTTGTACTCAAGATAGCTGATCTGGCATAAATAGCAGTTGTGTATTTCTCTTCATATCCTTCACTGAGAGAATGCTTTAAATTGTGAAGAGTAGAgagtttcaggaaaaaaaaaaaattactgaagcACAGAAAAACAGGAGCCGTACATGCACACAACCTAATTATCCCCCTGCATCAAGCCTAAACAGGCAGAATAAACACTGAGAGGAGAATATTTCTCACAGAACAGCAGTTAGGAGAGGTGTGTTGACTGGGTTTAGGGGACGGGGTGGCATCTGTACCAACTTGGGACAGAATTATTTCAATGATTTTAatgagttaattaaaaaaatgttttacctCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37141 lncRNA downstream 3533 21602544 ~ 21603863 (-) True G31489
TU37132 lncRNA downstream 74937 21532248 ~ 21532459 (-) True G31481
TU37101 lncRNA downstream 195223 21389477 ~ 21412173 (-) True G31454
TU36922 lncRNA downstream 222120 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 324171 21281364 ~ 21283225 (-) False lepr
TU37144 lncRNA upstream 6154 21615321 ~ 21615675 (-) True G31492
TU37369 lncRNA upstream 495031 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 521258 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 564184 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 587427 22196594 ~ 22197668 (-) True LOC117599242
XM_034298204.1 mRNA downstream 28317 21538999 ~ 21579079 (-) True cachd1
XM_026919886.2 mRNA downstream 75969 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 206468 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 206469 21386910 ~ 21400927 (-) False ak4
XM_026930474.2 mRNA downstream 229084 21342709 ~ 21378312 (-) False dnajc6
XM_026922851.2 mRNA upstream 25400 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 155748 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 187393 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 213575 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 348368 21957535 ~ 21968209 (-) True atg4c
XR_004580163.1 other downstream 75968 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 2006990 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4291563 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4471982 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 5021662 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 5030666 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile