RNA id: TU37225


Basic Information

Item Value
RNA id TU37225
length 238
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G31565
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21826498 ~ 21826735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCCCTCCATTAGACGAGTATTGTGCTGGCAAGCAGACGGTGACCCGTGTGATCTTCTGTCTATCAGTACGAGCTACTTAGCAGATGAAGCCAAAGCACTTTTGCCTTCGTGAcacttaaaaagaaaacaacgtTGTGAATTTGCCAGAGCTGTTTTTAATTCtcatttcagtctttcattcTTGGTTTCTTAGATTATCTGGTctatattttatgaaataataaaatatagccTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580201.1 lncRNA upstream 184148 21636184 ~ 21642350 (+) True LOC117599889
TU37020 lncRNA upstream 213620 21609233 ~ 21612878 (+) True G31384
XR_004580180.1 lncRNA upstream 420112 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA upstream 420112 21403473 ~ 21406386 (+) False LOC113526220
TU36879 lncRNA upstream 441156 21385006 ~ 21385342 (+) True G31260
TU37227 lncRNA downstream 3991 21830726 ~ 21830939 (+) True G31567
TU37381 lncRNA downstream 321463 22148198 ~ 22148470 (+) True G31693
XR_004579707.1 lncRNA downstream 338201 22164936 ~ 22165852 (+) True LOC117599240
TU37392 lncRNA downstream 355469 22182204 ~ 22188503 (+) True G31704
XR_004579713.1 lncRNA downstream 393647 22220382 ~ 22221526 (+) True LOC117599245
XM_034314527.1 mRNA upstream 30989 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_026923022.2 mRNA upstream 378415 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA upstream 378415 21408754 ~ 21448083 (+) False jak1
XM_026918093.2 mRNA upstream 808631 21014838 ~ 21017867 (+) True insl5a
XM_026918107.2 mRNA upstream 814768 20999483 ~ 21011730 (+) True wdr78
XM_034313266.1 mRNA downstream 143239 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 221781 22048516 ~ 22101105 (+) True kank4
XM_026917154.2 mRNA downstream 251998 22078733 ~ 22101105 (+) False kank4
XM_026917147.2 mRNA downstream 252039 22078774 ~ 22101105 (+) False kank4
XM_034314532.1 mRNA downstream 283213 22109948 ~ 22119632 (+) True LOC117599931
TU36319 other upstream 809051 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 1716273 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2289484 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2999578 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 771606 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1649216 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 2193643 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2826255 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2826450 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile