RNA id: TU37227


Basic Information

Item Value
RNA id TU37227
length 214
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31567
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21830726 ~ 21830939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTTCACCAGTTTTTACCTAACACGGCTTAGGAGCCAATTATCGTAATGAGGTTTGCTTTCCAGAGCTCATTGGTTGTTGTGTCAAATCGCTGATTGGCTCATAGAGCGCCCACGTGTGGTAACATCCGGGACCTCGCTATGTTCAAGCCACTAATAGGATCTTCAGGGATGTAGTGGGTCGCCAACAAGGCTAATAACAACCCAAAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37225 lncRNA upstream 3991 21826498 ~ 21826735 (+) True G31565
XR_004580201.1 lncRNA upstream 188376 21636184 ~ 21642350 (+) True LOC117599889
TU37020 lncRNA upstream 217848 21609233 ~ 21612878 (+) True G31384
XR_004580180.1 lncRNA upstream 424340 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA upstream 424340 21403473 ~ 21406386 (+) False LOC113526220
TU37381 lncRNA downstream 317259 22148198 ~ 22148470 (+) True G31693
XR_004579707.1 lncRNA downstream 333997 22164936 ~ 22165852 (+) True LOC117599240
TU37392 lncRNA downstream 351265 22182204 ~ 22188503 (+) True G31704
XR_004579713.1 lncRNA downstream 389443 22220382 ~ 22221526 (+) True LOC117599245
XR_004579714.1 lncRNA downstream 396276 22227215 ~ 22231015 (+) True LOC117599246
XM_034314527.1 mRNA upstream 35217 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_026923022.2 mRNA upstream 382643 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA upstream 382643 21408754 ~ 21448083 (+) False jak1
XM_026918093.2 mRNA upstream 812859 21014838 ~ 21017867 (+) True insl5a
XM_026918107.2 mRNA upstream 818996 20999483 ~ 21011730 (+) True wdr78
XM_034313266.1 mRNA downstream 139035 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 217577 22048516 ~ 22101105 (+) True kank4
XM_026917154.2 mRNA downstream 247794 22078733 ~ 22101105 (+) False kank4
XM_026917147.2 mRNA downstream 247835 22078774 ~ 22101105 (+) False kank4
XM_034314532.1 mRNA downstream 279009 22109948 ~ 22119632 (+) True LOC117599931
TU36319 other upstream 813279 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 1720501 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2293712 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3003806 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 767402 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1645012 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 2189439 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2822051 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2822246 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile