RNA id: TU37392


Basic Information

Item Value
RNA id TU37392
length 6242
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G31704
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22182204 ~ 22188503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgacttttaaacatctctttaaTCTCCAGAaaaaattaatcagtaattttttttttcactttttaaaaggATCAAGATATATTGCACAGGTATATCAAAAAATATAGGAAGTCAAAAACTGATATCATAAAACAAGAAACATCATATAATTCATTATCATACATAAATGTTCAGAGAGCCATCATAGTCAACTTCACATATGCAGTTATTAATGCCCCACCTGTTTTTAAAGGTCTCTATAtccattattaaattataaaaggCAAATTCAACCTTTAAGCGTGATTTTATCAAACCCCTAAAATCAACGTAACATCAGTCTGTCCCATTCCAACAATCTTATTTTTCCTGTGACAGCCAAATAGCCAACTTTGCTTGGCCAAAAACAAAATTCACTAATACATAGGTCTCCCTTTTGGAATGTTTATATTTAGGACCATagataaagaaagtaaaaacctccgctaattcacaaaaaaaaaaaaaaaaaaagggacaagcctttcacattcagaaaataaatgaaaaactgtttcCGACTGTCCACAGAAAAGGCAACCCTTGTCCTGTGTCTGTTCATCGCTATTATACGAAgtgaagtaaagtgaagtgaagtgaagtgacttgtggccaagtatggtgacccatactcggaatttgtgctctgcatttaacccatccaagtgcacacacacagtagtgaacacacacccggagcagtgggcagcctttttttgctgcggcacccggggagcagttgggggttcggtgccttgctcaagggtctcacctgagtcgtggtattgagggtggaagagagcgctggtcattcactccccccacctacaatccctgctggacctgagactcgaacccacaaccttcaggttcaccttcgggttgcaagtccgactctctatccattaggccacgactgcccccgtGCACAATCCGCCACTGCAGGTCTCCAGACCGTTTCTCAATGGGGGTTTGTACAAGGTCCTCCAACTACCTTTGGGGGAAAAGCCTGATCCAAAAAAGTCCAACCACTTAGACTCTTTTACGCTCTCCAGAGTATGACAATGAAGAGCCTTTACACACATCACATGTAGTTGcttcttcaattcaattcatttttatttgtatagcacttttttttttttttttttttttttttttttacaaaggtcattgtctcaaagcagctttacacaaacaaagtaaaatgaagtgtgtgtgtgtgacgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaactcagagactcagagaacccatcctcatatgggtttacactgtagtgcacgtgtgtgtgtgtgtgtacaatgtgcgtttgtgtagtccagagtgaggGGGGGGGGGTCTGGGTCTGGATCatcagcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcagcagtgtagctcggcagaaagagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaacttaatgaggagtgcaggggactccggcaagactagctataacagcataactaaaaggagaacCAGGGGGAAACACAGACGTGAGAGATCCCCGATATGTAAGGCATACAGTCATTCTGCCAtcacaaacctgagtgactaacgagagtgaggaagacagcatccaaacacgccagatcaccataacactcatccacgagtcccccagatctactcctttgtctaaaacactagtcgctaaatgctaggttaaataaataagtcttcaacctcgacttaaacactgagaccgtgtctgcttcacatacattaactgggaggctattccataattttggggcttggtaagagaaagctctgccccctgccgtggttttggcaatgcgtggtactgatagacagcccgcgtccttagagcgaagtaggcgcggcggaacgcaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatattttaaaatcgatgcggaatcttactgggagccagtgtaatgtagataagactggcgtgatatgctcatacttcctagtcctagtaaggaccctcgctgctgcgttctgaactatctgaagcttatttatacATCTAGACaaacatccagatagtaaagcattacagtaatctaatctggacgtgataaatgcatggactagtttttcagcatcacttagcgaaaatatatttctaatcttagcgatatttctgaggtggaaaaatgctaacctgcttacattatctacatgcgcctcaaatgagagattagagtctataatcacaccgagatcttttactgttagactacttgaaagaGAGACtgtctaaagtaacagtgtgatctttaaacttacttctagcggcttgtggtcccagtaccagaacctctgttttttccgggtttagcaggagaaagttgcttagcatccagtctcttatgtctatcgcttCTTCCCAACAGCACTGAAAAGTCCTGACCGAGGTAACGCAAAAGACAGGATGTTGCACTCTGTTTCTTGCCACTCGCCATTTCCTGCTGAAACCTCCAGGTCTGGGAAGGATAATACTTCCTCCTCGCCAGGTACGACCAGGGACACGCTGTAATTCTGCGGCAATCGTTCCTGCACTTCGGTCAGAAGTCTCTGAGCAACTCGAACAGATCTTATGCCAAGCTTAAGCGCCAATGTCTATGCAGACAACCAGCCATCCTCAGAGGCTAGATGCCCTACTCTAGCAATGCCTGCAGAAAGAAGAGCATTTCTCAGGAAGAGggatttaaaaatgtccaaCTCAAGTGCTGGTTTGAATAAGGCTCTTCCTTTAGCCACTGAAAATAAGTGTCACTTAACTCTCGAGAAATCGTGAAGAGTGTCCATGATTTTAACACTGACTCTCCATAAAGAAGCCTTTGAGCTGTCTGGAGTCTGAAGGCCTTAATCCGTGACCTAATGTGGAGGAGCCCCTGACCCCCCTCTTGCCGAGGCAGATAGAGGACTGAGGCTTTCAGCCAGTGTTGTCCTGACCAGAAAAGGTCTATTAATCTGCATAGTAAAGGTTCAGTGACAATACTATAAAGTTGCCCTGAAAGAGGACAACCTTGTCTGATACCCCTTTGAACCCTTATAGGAATACTGAGACCACCGGCCAATTTAATTAAACAAGTAGCTTCAGAATAAAGCAGTCtgattaatgaaataaaatgatctcCAAAACTAAAGGCTTGAAGCATTTCAAATAGACAGACATGATCTACCCTATCAAAAGCCTTTTCCTGATCTAATGACAAAACCCccacattaacattattaaaagaagCAAAGTCAAAAAGATCCCTCACCAAATGCCAATTATCTGCAATAGAGCTATCCTTTATACAGTATGACTGATCCTTATGTATGATTTGTTGCAGTATTTAATCTTTTGGCTAAACATTTAGAGAGAATCTTGTACTCAGAGCATAAAAGTGCCACAGGCCTCCagttctttaataaagttaAGTCTCCTTTTTCTTGAAGCAAAGTTAAAACCGCACACTGGCAACTCTTAGGAAGACTTCCTTCATTAATTGATTCctgaagaacttttttttttaaaaaaaagtcattcccAATGACAGTCCACAAGCTCCTATAGAACTCAGTAGGAAGACCATCTATTCTGGGTGTACGGCCTAAAGAGAGTTCCATCACAGAGGCAGTCACTTCATCAAAAGCAAGTCTTTTTTCCGAAAAGATTCTTCTGCTCTGAGGTCAGAACAGGGAGATCCTGTAGAAATTCTTTTCTACAATGTCCATCTGAATTATCAGCAGCAAAAAGAGTAGAGTAAAAGTCTACAGCCAGTCTACACATGTCCACTGGGTCAGAAGTAATACACCCAATACTGTCCTTTAGACTGTACATCTGTTTGTCTTGAGCAGCTTTGCGTtccaaatgaaagaaaaaaaaaaaaagtaggatcATCCATGTCTCTCACTGTTAAAAACTTGCACCTTAAGTGCACCCTTGACTTTTTCATTTAAGATAGAACTTAAGGAAAGTTTTTTTCAGTCCACTTTTCCTGTAAACCAACAGTGTTGTTAAGTCATGTTTCTCTCAATAGCAGTAATTTCTTGTTCCAGTTGCTCCAATGTCTTCTTCAAGCATGAAGTGGAATAAGAAGCGTATTGCTGACAAAACAACTTTATATGTGCTTGCCCCACTTCTCACCACTGAATTATACTATCAAAACAGACCTTTTCAACTTTCCCAAAATAACTTAAATTTCTCAATAAAAAGTTTGTCTTCTAAGAGTCTTACATTAAAATGCCAATAATAACTCAGTCTTATGTCCAAGACACAATCAACTGTGATAAATTTGTGATCAGAGAAGGACATGGGGACAACAGTTGTGTTTCTAACTATTTCTCATATTTCCAGATACATAAAACAGGTCAAAACGTGCAGCAGAAATCAGACCAGTGCTGACTTTCACTCAAGTGTACTGTCGCGTTGAAGGATCGTGTTCTCtacaaacatctaaaaaaattcAGGTTCTCAATCACATTAGCTAAACAGAGTGCTGACTGTGAATGTGGCTCCTCCCCATTTCTATTAAGTGTAAAATCCAATGTGCAATTCCAGTCCCCCaccaaaacaataaaatcttcATTCTGGTTTTGCCTTAAAAATTGTTTCAGCTTAATGAAAAGTTTAATTCTATCAGGGCCAGTATCAGGAGCGTAAAATATTcacaaacaaaaagcagaaGCTACTTATTTCTGCCCTTACAGTTAGCAGCCTTCCAGGTTCTAACTCATGTTTCAATAAAATTTTGGCTTTAacagcaggggaaaaaaagcacagcCACCCCTGCACTTAAATTAGTCCCATGACTGAGAACACGTTCTCCCTCCCACCACAATCTCCATTCAAATTCATTGCTTTGGCTACTACGACTCTCTTGAAGGAAAATAACATTCGACTCATTCAAATTaattatttcctttaaaaaatgaTCTCTCTCACATCCCTCATCCCATTCACATTAACGGATCCTATTCTTAAGATCTCCATAAAGATGAAAGAGGGAAGGAGTAGACAGTATAGAAAGGAGATACAGATACAATTCAgcatgttcattttgttttcccTCTTATTAGCCCCTCTTTTTGTGTCGATCTACCTGGTTGTCTAATTGCAGTGATGTTTCTTTAGGCGAAAACGCTTTTGTTGTGAAAGTTCCTTGTAACTACTCACTTTTCATGCCCACATCACAGAAGAGACACACTTATCAAGGTCAGGAAAGAAATTACGGGCTTCTACACCTCCTTTACCTTTTGTAAAGAAAGCACATGTTTAAGCGCCGCATTTTTACACCCTAACGGAATCATCTTGAATCTCGTTCATTCTTTGATGATAACATCATTAGAAATAAAAGGAGGGACATTAGAAATAGTGATTCTGGTAGCTGGAGCGGACAGCGGGGTGATCGGTACAAAAGCCTCCTTCACCCATATTCCGCTCACAGTCAGCTGATTCAATAAAGCTTCACTCATCAAAAAGACAACGATTGCTTTGCTCATTCGTGAGGCCGACAGTATATTCTCAAACCCGACCTGCTCTCCTACAACTAAGAGCAACTCTTCGACCGCAACACCAGGGTCTGGCACACACCTGCACCCATTACGAAGTGAGAGCACAGGTGGCGTTTCCTGCACGGGAACTGCCGCCATCCCGGCGTTTACAGTACCGCAAGACCCGCGCTATACCGCCTAAAAAGACAAACCAACTGACTAAAAAGAGGGAAAACGTCCAAGAAAAAGCAATTCTCGCAACAGCACACCCCGCTCTCGTACAAACTCACACAACGCATgcgcacacagagagagagagagagagagagagagagagagagctgtctgCCCCTGGATATGCTGCCATGTTTTCCTCTGCCAGCTCTATCACTGCGTCCAACATCCACCAGCTTGTGGCACTGGACTCACTCCAGTGTTCCTGTCAGAAAACCTGCTACAAACTGCTCCTACACCACCTTTTCCTGTCCTTTTTTAtcacatatttacagtttatacactACAGCACAAACgacaacacatacacacgccaACAACAAAAGCTCAACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579707.1 lncRNA upstream 16352 22164936 ~ 22165852 (+) True LOC117599240
TU37381 lncRNA upstream 33734 22148198 ~ 22148470 (+) True G31693
TU37227 lncRNA upstream 351265 21830726 ~ 21830939 (+) True G31567
TU37225 lncRNA upstream 355469 21826498 ~ 21826735 (+) True G31565
XR_004580201.1 lncRNA upstream 539854 21636184 ~ 21642350 (+) True LOC117599889
XR_004579713.1 lncRNA downstream 31879 22220382 ~ 22221526 (+) True LOC117599245
XR_004579714.1 lncRNA downstream 38712 22227215 ~ 22231015 (+) True LOC117599246
TU37435 lncRNA downstream 129180 22317683 ~ 22322046 (+) True G31744
TU37451 lncRNA downstream 136618 22325121 ~ 22325337 (+) True G31760
TU37560 lncRNA downstream 292901 22481404 ~ 22485447 (+) True G31856
XM_034314532.1 mRNA upstream 62572 22109948 ~ 22119632 (+) True LOC117599931
XM_026917138.2 mRNA upstream 81099 22048516 ~ 22101105 (+) True kank4
XM_026917154.2 mRNA upstream 81099 22078733 ~ 22101105 (+) False kank4
XM_026917147.2 mRNA upstream 81099 22078774 ~ 22101105 (+) False kank4
XM_034313266.1 mRNA upstream 148114 21969974 ~ 22034090 (+) True dock7
XM_026933381.2 mRNA downstream 204325 22392828 ~ 22406479 (+) True cyldl
XM_026933384.2 mRNA downstream 204325 22392828 ~ 22406479 (+) False cyldl
XM_026933383.2 mRNA downstream 204325 22392828 ~ 22406479 (+) False cyldl
XM_026933385.2 mRNA downstream 204325 22392828 ~ 22406479 (+) False cyldl
XM_026933382.2 mRNA downstream 204325 22392828 ~ 22406479 (+) False cyldl
TU36319 other upstream 1164757 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2071979 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2645190 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3355284 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 409838 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1287448 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1831875 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2464487 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2464682 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU43821 True 1988 lncRNA 0.43 2 CI01000005 4852378 ~ 4854389 (+)