RNA id: TU37435


Basic Information

Item Value
RNA id TU37435
length 4334
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G31744
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22317683 ~ 22322046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTGACACaactttttattaaactttatgaAAACAAGATTCTGAACAACATtccattcagaaacatttcagattGGACTTATTGACACGTAGAGGACATTAGATGTTTCtagaataaatatatagaaatcatgtatatacagttttgtttttttacacaaacagcCCATCTCTGAGCCAAGATCATCTCAAGCCTCCTCATGTGCTCCTTATGGAAGTAATGTCCAGAGACTGCGCTCACACTGCATTCTGCCTGAAGCAGCCTGAAGCAGGAGGATCCACTGGCTTCCTGCTGCCCTTCCCAAacaacacctcacacacacgaGGAAGATCTGACTGAAGATCTGACTGACACcccactggaaaaaaaagaatcctaCTGACTCTGTATAACTCTTAAGTACTTGATTAAGATATTGCATTTTGCATGTAGGCTACTGAGACAAGATTCTGggttgttttaaatattttgggGGTCATTTCTATTGCACATTTTTCCAACAAATTCTGAACTGCTCTTAAAGAACCATCACATCTTGTTCAGCCTATAGTACAATTTAGTGTACGTTGTATTCATGTTATAATTCTGCCTAAGAGCAATTAACTGGTCAGGAGTATATTCTGTCAAGCTAACAAAATAATGCAGCATATTTTAGAGCATGTGATAAAATCTACTTATCATCATAACTTGCATCCATTCAGCTTCAAAACAATCAGTTCAAGCATGGCTATTTTGGTGTTAGAAATATAGGATGTTTTTAAACCTGCCACATCTAGCATTAATCAAAAAATTCTTTTCTATTCGATTGGTATTCAATTGAAGcatataaaaatgcacattaaaattgtttttcagTCCTTTGGTGAATATCTATAGGATGTAGCAGCGACTGAAGTCCATGTATTGTATGTCACCTTCCATGAATCGCAGCATATCCCTAATTCCCTCTGTTCCAGTGCAGGAGGCATTGCATCTCTTCTTAGGCTAGATATTGTACATATTCGATAGAAAGAATATCGTTGATCTATTTGCATGCTTTTACATACAAACATTGCAGTTAAGAtgttgcttcttttttttttaataaacaagcaaaaaagacttggggggaaaaataattcaaaatgaaCACACTAACTGATTTCTACATATTTACACGTTGTgagaataaataagtaaaatctGGCTCAGTTCATTTCGTCTATGTGGCACTATTCTGTTActcagaacattttaaaaaagaaagaaagaaaggaaagaaaggaaattgGGGTCGGACGCATTTCCCGGGTGTAAAACCTTCCTGGACTCTTGTAGTTTTGCGGGCTGTGTTCCAATTCCTTAACTGCATCTTTACTAAAAGTCTAAAGAGgttacactacactgttcaGACTTAGAAGAGAGATAAGATGGAGAAGGAGGAAGATACAGGGCTGATTAAGggccatgctttttttttttttttttttttcatccaggTGTGTGGGAAAGATACAAAGGGCTTGGAGATTTAGTGACCATACATGTCCCGCATGCAGGGTTGGAGGGTGGATGCAGGCTGCAATGCTTCCTTCTCAGGTTCATGAGTTACTACAGAGAGTACAACCATGTCAAATAAGTCCAACAATCTATTgcttttccccccttttttcattcattcgttGGCTTGCAAATTTCCTCTTTAGTCcgatcacaaaaataaataaataagtaaataaatagcatTTCAGTTCCACCCGTCTCGCGCTTGGTGCAGTCGGATCCGTTAAGACTGTGCACAAGTCTGAGAACACAAACACCGCTGGCTGTATGAGCATGTAAGACTTTTCAGATTACAAAACGCTCTATGCTATAATACACTGAGTCAGAAAGCACGCTGTTTTGGGTCTGGAGGTGATGCATGAGTCCACGTTTAGGTCAGAGGTGAGGTCCGTGTATAGCTTCTCTATAACACACTACCTTTAAGACTTCGAGAGTTGAAAGTCTAATGCACGCGCACAAACACTCAGAATATGGTGTGTGCGTTACTGGAAATATGTTGCTTGTGGTAGTCATGTAATGATCTGAGtccttggctttttttttctgaaaagcacACAGCAAAATCCTCAgtgttaaatgaacaaatacactcaaaaaagcGTACTAAAGTGCACCTTTCCCTGTCGGGGAGGTGGTACCCTTCCCTCTTGTGCATTTAATATGCAGCTTTCACCTAGAAATGTTGACATGGTGTACCTTCATCATGTAAGGTACATATTTGGACCGTAAATAGTGCTGggagtaaagctttaaaaagcaCTTTTCTAGGTCAAAGACACACACTAAAGTTAGAACAGGTGTACCCTTGAGGgtaacaaggaaaagtacactttagtacctttttttttgcaagtgttAATTCAGCATCAGGGGATTTTGCTGTGCAGGAACTGTAgcctaaattaaaaaaaaaaaaatcacactcaGATAAAAAcgaaaagtttaaaaaaaatcagtttgtgtgggataaaaaaaaagacctgaaacaGTTCTCACATGAAGAAATCCGCCGATGAGGCTTTGCCGTGGTTGCCGCTGGACGGGTCCCGGGTGCCGCTGCTGCCGCCGGTGAAGTTCCGGCCTGCGAGCTTCTCGTACTTTTCTTTGTACATGTCCCTCTCTTTGGCCAGGCGCGCCACGTCCTGCTTGAGCTGCTCCACCTGGTTCTGCAGTGTGCACTTCTCGGTCTCGAGCATGTGCCGCTGCTGCACGCGCTTGTAGCGGCACGACTGCGCGTAGCCGCGGTTCTTCAGGGTGCGCCGCTTCTGCTTCAGGCGGATCACCTCCTCCTTGCTGAAGCCGCGCAGCTGCCGGTTCAACTCGCGCACCGTCATGCTGACGAGCTGCTCGTCCGAGAAGCGGTCTTCGAGGCGCGCGTGCGTGTGGTGGccgtggtggtggtggtgcgcGTGGTGGGCGTGCGCCGCGTGGTGGTAGCCGTTCGAGGAGGTCGACAGGTCCTCGCCGACGTACTGCTGCCCGCGGAACGTGTCGTAGGgctggtggtgatggtgatggtggtggtggtgcgcGTTGCCAATGAGCGCCTCTACCGCGTCCTCAGGGGTCAGGTTTAACGCCTCGGGGCTGATGTGGTGCTGGTAGTTAGGGATCCAGTAGAAATCCTCCAGCTGGGGCTTGCCCGAGGCGCCTTGAGtactgttgctgctgttgtttccaccattgctgctgctgctgttgttgttgttgttgttaactCCGAGGTTCTGGACGGGCTGTGCGCCGGGACTCGGTGCGCAAAAGCTTGGCGAGGAAGGCACGGAGGAGCAGGGCGTGCTGATGGGCGTGGAGGAGAGAGAGCCCGGCGGTAAGCGGTGGCAGTAGCGCTCGGCTTCAGGCGGCTCTTTTTTCACCTCAAACTTCATGAGGTCGAAGTCGTTCACATACTCGATGGCCAGGGGGCTGTTGGGCAGGTCAGCGCTCATGGCGAGGTCCGCAGCCATGTCAGTCCATGCGAGGACACGTGCAGCCTCAGAGCCAAAGCGAGGGGGAGTGAGAGGCCCTGTGCTGTCCTGTAGTGTCCTGTGCTGTCCTGTGAAGACTGTGCAGGTGGGATGTTTCACGCACAGCTCTTTAGCATCTGTTTCTCTGATTTTAGTGCGTAGAACGGCTTCTATTTATAGCAGCAGGGCTAGACGTGCAGCACACGTGTAAACTCACTTGTACACCTGCCAGGTCGCCTCTGCGCTCCTCTTGTTGACAACTTCACTCGGGTCAAATGCACGAACTCGACACTTCAGAACTGTCTTTGCTTCAGTCCTCTAAACGCGCCTTCAGGTGAAGCGTAAATTGTAGAAAATGCCAGAAACAGGTTTGCCCaacttttcttctgtttttgcacGTGCGGTTATCCCTTGTCTCCAGCTGTGCACAGCTGTCCTCACACAGGGCCAAACAGCTGGAAGTTTCCTCACTCGCGCGGAACAGTCACCAGCAGCACCGACAACTCGAACCATCAGCCACTTAATCAGTCCAGTTAAGTGGAATGGTTAGCTAAGGAGAGTCAGTAAGAAACATAGCAAGAaaacacatacataaaaaaaaaaatgaaatcacagtAAGTTCCAGCGATGGGACAGCCCACAGAAAGAGTACTGAAGTCTGTCAGCGGATATCCCGAGCTACCTGCGTGCCTTCTCCTCCGTCAGGACAGCTTTGATATactttattgttgttgtttatatatatatatatgaaacagTAGATCCCTGTAAACTGCTTGCTCTTTTCCTCCAGCGCTTTCGCTCTCTCTGCCCCACCGACTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579714.1 lncRNA upstream 86668 22227215 ~ 22231015 (+) True LOC117599246
XR_004579713.1 lncRNA upstream 96157 22220382 ~ 22221526 (+) True LOC117599245
TU37392 lncRNA upstream 129180 22182204 ~ 22188503 (+) True G31704
XR_004579707.1 lncRNA upstream 151831 22164936 ~ 22165852 (+) True LOC117599240
TU37381 lncRNA upstream 169213 22148198 ~ 22148470 (+) True G31693
TU37451 lncRNA downstream 3075 22325121 ~ 22325337 (+) True G31760
TU37560 lncRNA downstream 159358 22481404 ~ 22485447 (+) True G31856
TU37582 lncRNA downstream 182458 22504504 ~ 22514013 (+) True G31878
TU37666 lncRNA downstream 260303 22582349 ~ 22585190 (+) True G31944
TU37722 lncRNA downstream 487349 22809395 ~ 22811006 (+) True G31979
XM_034314532.1 mRNA upstream 198051 22109948 ~ 22119632 (+) True LOC117599931
XM_026917138.2 mRNA upstream 216578 22048516 ~ 22101105 (+) True kank4
XM_026917154.2 mRNA upstream 216578 22078733 ~ 22101105 (+) False kank4
XM_026917147.2 mRNA upstream 216578 22078774 ~ 22101105 (+) False kank4
XM_034313266.1 mRNA upstream 283593 21969974 ~ 22034090 (+) True dock7
XM_026933381.2 mRNA downstream 70782 22392828 ~ 22406479 (+) True cyldl
XM_026933384.2 mRNA downstream 70782 22392828 ~ 22406479 (+) False cyldl
XM_026933383.2 mRNA downstream 70782 22392828 ~ 22406479 (+) False cyldl
XM_026933385.2 mRNA downstream 70782 22392828 ~ 22406479 (+) False cyldl
XM_026933382.2 mRNA downstream 70782 22392828 ~ 22406479 (+) False cyldl
TU36319 other upstream 1300236 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2207458 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2780669 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3490763 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 276295 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1153905 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1698332 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2330944 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2331139 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile