RNA id: TU37560


Basic Information

Item Value
RNA id TU37560
length 4044
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G31856
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22481404 ~ 22485447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTACACACTTTTAGGCAGTTTTAGAGACatttaatgcaatttaaaaGTCATAATATACAAAAAGTCTAACACATCAGAACTAAAGGACATTATACAGCAGATGTAACATGTGACaagatgaaatttaaaaaagtaagctTTCTATCATAAAAGCAAAACGAATATCAACCGTGGGTTTTGTCTTGCATTCACATTCAGTAATTATTGTTCAGTCACTGTTGTCTCGAAAATTGCTGTCTTAGCTTATTCAGgaattaatttctttattcCAATAATAGatatgaaatgttttactgTAGGTAACACTTatgtgtgctgtgctgttacTGTtcaattaaaacagaaaaaaaaaagaaattatgcctttttttttgctgatgatATGGCATTTTCAATATTAGGTTTCTATTATCAGCCTTGCATGTTTAAATAGGCTGGTATTGttgaatatgaaaatagatTTGAAATGTCTTCATACATAATACATCTGTTTCTATATAATCAGCAGTCAGCTTCATCACTTAGTGATGTAGATTCATTCCTGTGCTCAATAATTAGTGAAATACTAATGTGAGTGTAGGTGTGAGTGAATCCTGCAATTATGGGTGCAGACAAAAAGCTAAAAAGCTAAGAGCAACAGAGATTTTGCAGTGAAAAGGTAAGTTATTATCGGAATAATTGAAGCAGTGTACAGCAACATGATGTtcataaaaagacatcagtgcTAGGAACAGAACTGTTTGCAGTCATACCCAACTAAGTACTACTTCTTGCTTCATTTTCAGCTGACACATTTTGTTAAACATCAACACACCCAGTTTGAAAAGAAACCATCAAACCACAGAATACACATGCATCTGTTTCACAATAACAGGCAGCAATAATGTAGGCTATACATAACAAACACCATCttcaaaaaaatcacagaaaaaaaaatcaaacaactACCTATGTTGAACACATATTAGATACAGCTCTAGAAGCGTAATACTCAATATTGCATGGTACAGATGCAACAATTCAGCAAGTTTCATAACCAGAGAGCATGTCCGCTACTGCACACTTCTCATTAACACTGATACTATAACTACTTTTCTAAAACAGTACATTCTTACGTATTGATAGAACAATGTTGTTATCTTGCACATCAACACCAAGAGTGAATAGTTACCTGTGGCACAACCTCATATCTAAACATAATGTAGCTAATGAGACTTGCCCTTAAAATAGAATGACATATTGCTTAATATGTACTGTAACACTCCTATTGTGACTGATCCACAATGTCAAATAACAATAACGTACATTTTGGCACTGAATTGATCAAGATACATCCATTAGGTGGTTTGGAAATTGTTGAGTGGTTTATGGCTAATGAGGGATATAAATGAAGCTGCATTCAGTTCTGTAAAGGCCACAGATTCTACACTTAGTGTTCTAGTCCTGCACAACACCACAAGATTTTACTAATCCTCTTACCACTAATATCAGTAGAAATTGTTGCCTTTGAAGACAACATGAGTTGTATTTTGCATTCTAACATATATGTAAGTTTGCAATGTgctgaaataaaacagatttacaaCACATCTATTCTTTACTAATGCGGACAACACCTGAAAACATTAAGCAATCTTCTATAGTGTAACTTTACACAAAAATAGGTAAATAGCAATTTTCTCAAAACAAATATGTCGactttatttgtgtttcatCTCATGTTGAAACACATTCTGtctttttgcagtttctctttGCAAACAAGGCATTGCAATGtgatataaagtaaaaaaaaatggctgaaaataCTATAATACATGGTggtgaaatatttataaaaaaaaaaagcaaaatgtctttaaaaatgttgtgATTCAATGTGGAAATATCAAAGACAACTGAAGAGGTCAAATGTCTAACTGAAGGCTGAGAAACAAAATCAGAATGAAATTTTCTGAAGGCCTCTTGGTTTTTAACACAGACATACTTATGCACAATAAAAGCACTTCCCCAGAGCCACACAGCTTCATGCATTTGCAGTTGAATAATACTGGATTATCTTATCTATCATTTAAATTTCTCTATTCTTTCTTTTGTGCAAAAAGGCACTTTCATGATAAACTTTCTGAGCATCACTGTTAAAGAATATCTTTCTCAGTATCCCCGTTTGAGGAGATCTGAATTGACATCAGCTGCAAAGCTTCCACAGCCTTTGCAAACAAGTACGGCAATACCAGCTGTATAAAGCCAAATATCGAAATATTGATCTTTGGAGTAACAAAAGTGCCAGGTGATATGCTGATTTTGCTTTATATTTGGGTAAAATTATAAAGATAGTATTCTATTGTGATATTAAATTCAAAAAACACCAACTAAACCAGATATCAATAGGATATTACTACCAAAAAGGGTGTTACTAAAAATATGCCCAAAATAGTCACTTTGTATTTATGAAGCTGAAGATTTTTCATAAGactatatatttacaataattatcTTACTGATGAAgcattcacaaaagaaaaaaaatcatgcaaacaGCAAGAATGAGCcaaacaaattacaaaatcaTGAGGTGCTTTGCTTGTTGTTTGCTTTAGTGACATTTTCAGTACTAACGGCTGTTTagaaaattctttttaaaaaaaaaaaataccagagGCATTCACTCACAAAATCACAACTGTactatttaaagtatttaatgtATTAGTTTTCATTTGCAGGTATTAGTTTTGCTTTTGTTCATCTAAAATAATAAGAGTTCAAAGTTTTTACCCCACTTTTCAGTTAACAAAAATGGTCCCGATTTGACTAACCATATACATTCACAGTTCTAAACTGATAGTCAAACTGCATTTAAGAAAAGCTTTAACATGCTCTTTCCCTACCTCATATGAGACTTGAAACTTTCCTAAACTTTCCCAATGACACAAGTGAGTATGTCCTCTGTGTGCTTTAAGAACATTAAACTGAATAGTTCCTCACTTGTATCAACATCAATAAATGCAACAATTCTGTGAATCTATGAAGAGCATGAAATCTCTCTCAGCTattcagtttcttttctttttcagttcttttcacAAATTTTATCCTTACTTTCCATGactgaaatacagtataatgaatATTCACACTGGCAGGGAGACCACAGCATGGTCTAGAGCAAGTCCAAGATCATATTTACCAGCACACGGAGAAGGAGGTTCCAGAAAACACTGAACAgtttctaaataaaatacttttggCAGATTAGTAGCTCTTTTACCTCTTATATTTCTACTGTATTAAATCAAATAGATTTAGTGTTAACATTTCAGTGTTGAAATATCCCTTTTCTTGAAGTTTGATTGAGCTTGTTGTGATAATGGTCTACAGAATGGTCAGTGTGTTTCCCTTTGTATCATCCAAGTATTTTTTGCTAGGATCATGGATAAAACCATTCCTATCTGGCCGAGGGAACAGGTCACATTTTCTTGAACATCAATATGGGCAAGAGCTCCATGGCAGGTCATTGATATTTAGCCTTTGTGTTCAAGATCATCACAATGAATAgatgtaaaatatttctttcatttgGCACGACAATGCCAATGAGATTTTCATGGCTCTAGAAATTCATATTCctttcatttatataaaagaCGAGCCAAATATTTGTCTCCTTGACCATGTGATCATTAAAGGTGTTGAATTCTTGTGTGTTCAGGAGCAGATTGCTCTGATGAATGGCCTCCAGCATCAGTTTGCCCCACACAATGCAAGCTCATACACGTCTCTGAGGTGAAACTGGACTACTATAGCGCTATGTGTGAggggttcagtgtgtgtgtctgcggaTCTGAGAGACTGCAGCTCATGTGGCTGGAGTCTCGGCCTGCAGGCTGGACATGCGGATCTGTGAGCTGCTTTTGCTGAGGATGGAGAGCTGCGTGCCTCCATTTACGCCACTGCTAGCCAAGGACGGGTGCCTGTGCTTCATGTCCACCGCAAAGTAACGGTTCACCGTCCAGCTCCTCCACTTCCTCTTCACCTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37451 lncRNA upstream 156067 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 159358 22317683 ~ 22322046 (+) True G31744
XR_004579714.1 lncRNA upstream 250389 22227215 ~ 22231015 (+) True LOC117599246
XR_004579713.1 lncRNA upstream 259878 22220382 ~ 22221526 (+) True LOC117599245
TU37392 lncRNA upstream 292901 22182204 ~ 22188503 (+) True G31704
TU37582 lncRNA downstream 19057 22504504 ~ 22514013 (+) True G31878
TU37666 lncRNA downstream 96902 22582349 ~ 22585190 (+) True G31944
TU37722 lncRNA downstream 323948 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 502674 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 692485 23177932 ~ 23187094 (+) True LOC113538428
XM_026933453.2 mRNA upstream 6842 22426920 ~ 22474562 (+) True ghrhrb
XM_026933454.2 mRNA upstream 6842 22426920 ~ 22474562 (+) False ghrhrb
XM_026933381.2 mRNA upstream 74925 22392828 ~ 22406479 (+) True cyldl
XM_026933384.2 mRNA upstream 74925 22392828 ~ 22406479 (+) False cyldl
XM_026933383.2 mRNA upstream 74925 22392828 ~ 22406479 (+) False cyldl
XM_026933369.2 mRNA downstream 67369 22552816 ~ 22560612 (+) True akr1a1b
XM_026933365.2 mRNA downstream 77792 22563239 ~ 22570318 (+) False nasp
XM_026933364.2 mRNA downstream 77793 22563240 ~ 22570318 (+) True nasp
XM_026933366.2 mRNA downstream 77796 22563243 ~ 22570318 (+) False nasp
XM_026933323.2 mRNA downstream 112148 22597595 ~ 22603436 (+) True tmem69
TU36319 other upstream 1463957 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2371179 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2944390 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3654484 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 112894 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 990504 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1534931 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2167543 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2167738 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile