RNA id: XM_026933625.2


Basic Information

Item Value
RNA id XM_026933625.2
length 2578
RNA type mRNA
GC content 0.47
exon number 14
gene id ccdc17
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22572432 ~ 22581943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCAGTGTCCTTTGTTAAGTTGAATTGACATGGTGACTGTAACCAACAAACAAATCCTCACCAGCTGAGAGAAATGATTGGTGAGGCTGAAAACAGTTTAGTGTAACATTACCGCCTGAATCTGTAAGCAACCTGAGTGAAAGTTGATTACTTTTTGAGAGAGTCTGAGATGGAACACTCGGGAGAGTTCAGCTGTCCTGATTGTAACATGGCGTTTCGCTCCTTTGACCTTTTGGACAAACACAAGTCCCGGTTCTGTATAGGAAGTGCCATAGGAGACCCGACAGTGTTAAGGAGAGGACGAGTGGAAATCACTGAGCCTGAAAAGGTGGATTTGAGGGCATTACGCCCCAGAAAGACAAAGACTCCTGATCTAATTCATCTGAGTGAGCAGAGAGATAAACTGCTAAGGCAGACTGAAAGACGAGAGACCCACAGAGAACCCAGCGTGGCTGACAGCCTGGCCTTTAACAGGCTCACTCATGAGTTTCATAAGCTGAGGATGTCCATTGAAGAGAGTCTGCCCAGAAGACACACAGAGGGAATGTATCCAGGCAGAAAGTGGGCTGATGGAAAGAGGcttcaggaagtgtgtgaacaccATGAGCAGAAGCTGGCTGAGATCCGGGCACACACCACCGAGCTGGAGCAACAGAGAAAGGAGATTGAACGGCAGATGGCCCTGGTTGGGAATGATGGAACGGTTCATCTGAAGGAGATGCTGCATGAGCTGAAAGAACAGGAAGAGAGAAACGAGGAGGTTCTGTACCGACTCAGCACACAGATCAATGCACTAcatggGGTAAAAGATGCTGATGTTGCGTCAGACCAGCTAGAGGACAGGAAGACACGACACTTCACCTTTGACCTCATCTCTGCTGTGGATGGCCTGCTCTCCAGCCAGATAAGAGCTTTACATCTAGCATACATACAGTCCGGTGGTTCTGATCCAGAGGTTCTGGCCCATCTGCATGACCTGCAGGCTGAGGCTCACTCCCTGGAGCAGAGCAGACCTGCAGCTGAGCACAGGACGAGAAAGAAAAGACGAATGAAGTCCTCTCATGCAGCTCTGGACTCAAGTATTATGGTAATGGAGAACGAAAACCAGCAGCTGGAGGAACAGATCCTCAAAttgcagatagacagagagagacgcagAGGAAGAGCGGCTGGTTCAGAGCTCGATCTGATCCAGAGGCACCACATCCATCAAGTTGCCAGCCTGCAGGCTGAGATCTCCAACCTGAGGAGAGAGGTGGAGAAAAGCAGGGGGAGAAAGACTCATCCTCCTGCTCCAGAATACAGTTCACAGCAGCATTCACTAATGGACAGACATGTGATTGACTCAGTGGACTCTCTTGGTCCTGCTCCTTATGATCCTGCGTCTGGATTTGTGATCTTCTATGACCTGGTCCTTGGTGTGGATGCCACGTTTAGAACGGTTCTTCTGGTAGCCAGGCTGTACTCTGGGGGGCAAGAAATCGGGCGGCCCACCCCCATGCCACCTGTCCACTGCCAGCCTGCTGGGGCTTTAGGCTATCCACTGAGAAGGCATGCTGGAAACTATGCCTTACTAGCTGTCAAGCAGCCTGTGCACAGGGTGCagccatctccatctctctactTGGTGGTGGAAGTTCAGGTTGTTGGTGGTTTTGACTTGTGTGATCAGGAGATGGGAGGCTGGTCCAAACTGCAGCTCTTTGACAGTCACAATCAGGTTCAGAGTGGATTCTGGAAACTTCCTTTCCGCTCTCTGCCTGTGAGACCGTCTCTCAGCCCGGGCCAACTCAACTCTGTACCTCAGTTGGGTAACATGGAGATTTGCCTTCGCATAGTTAATGCTCGTGATGAAGATGTACAGTCACTTGCTAAGATCGATCCTAACAATAGCAGGCAGTACAAATACCCATCAGTGGTCACCTCACACTCAAACACTGACTTGGAAGAACAAACATCCCAGCCGAAAACATTACAACTTTCACTCAATCCTTTTCTTTCATCATTGGCCCAAACTGATCATGTGGATCCTCCCCCTAAGGACAGTGGTCAGAGGTGAGAAGGAGAGATGAACCCCAAACCAATCGGATCTGGGCTGTTCTGAATATGTACATGTTGATCAATTCATTGCCATGATGTGTTCTGAGTCTCACTCATCCCAGCTGATTTGCAAATTCTAATTAGATTGACTTATAtacaccacaatgctgttgactGCTtgattctaattggtcagaaggtgttgattacttttctgtaacagcagcagtgacagttgttctggctgcaaggcaaatcacaggtttatatttgtgcttgttctaatatgttgcTGTTTGTATAGTAACACCATCCACAGGCCCTTGAcactttctgtaaggacatgtttatttaacatttttggaaggagtcttcagtgtcagtgctttatgaCAGATTGACGGCTCTACAACATTAAGTGTGCAATGTCATTGtttaatcatgaaaaaaaatggtaactattggcaaatcgctgtggtgtaagaggaataaaccacttggatgtgtgttgttattggaaaataatctgctttgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37647 lncRNA downstream 3596 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA downstream 3596 22565292 ~ 22568836 (-) False G31934
TU37625 lncRNA downstream 11824 22538323 ~ 22560608 (-) True G31916
TU37446 lncRNA downstream 256426 22315806 ~ 22316006 (-) True G31755
TU37433 lncRNA downstream 345772 22224385 ~ 22226660 (-) True G31742
TU37680 lncRNA upstream 405 22582348 ~ 22585190 (-) False gpbp1l1
TU37952 lncRNA upstream 129270 22711213 ~ 22785690 (-) True G32157
XR_003403825.2 lncRNA upstream 408504 22990447 ~ 22995189 (-) True LOC113538262
TU38041 lncRNA upstream 460588 23042531 ~ 23042762 (-) True G32244
TU38121 lncRNA upstream 643139 23225082 ~ 23225389 (-) False dmrt2b
XM_034300001.1 mRNA downstream 20133 22547254 ~ 22552299 (-) True LOC113538473
XM_034300010.1 mRNA downstream 20205 22547254 ~ 22552227 (-) False LOC113538473
XM_034300006.1 mRNA downstream 20319 22547254 ~ 22552113 (-) False LOC113538473
XM_026933565.2 mRNA downstream 21107 22547254 ~ 22551325 (-) False LOC113538473
XM_026933520.2 mRNA downstream 58374 22484092 ~ 22514058 (-) True adcyap1r1b
XM_026933319.2 mRNA upstream 360 22582303 ~ 22593861 (-) True gpbp1l1
XM_034312142.1 mRNA upstream 191183 22773126 ~ 22964855 (-) False pik3r3b
XM_034312138.1 mRNA upstream 191183 22773126 ~ 22964855 (-) False pik3r3b
XM_026933188.2 mRNA upstream 191183 22773126 ~ 22964855 (-) True pik3r3b
XM_026933189.2 mRNA upstream 191183 22773126 ~ 22793323 (-) False pik3r3b
XR_004580163.1 other downstream 1041004 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1034214 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3318787 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3499206 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4048886 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4057890 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile