RNA id: TU37722


Basic Information

Item Value
RNA id TU37722
length 1474
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G31979
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22809395 ~ 22811006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgctgcactgtaactcaccgtgcccattgtcttgttttgatagtttttgtactgtcttgtgccgtCTGCACATGtctgcactgtgcactttacataaatatatataatgtctactgtagttctgtgtttgtcctatgtagcaccttggtcctggaggaacgttgtttcgttttaCTGTGTACttactagctgtatatggttgaaatgacaataaagccacttgacttgacttgattagACTGATGTTGTGGAATCCTGTGTAGCGCATCAGTCCGGGGACAGTTAGTTGTggtatatacagatatatatatatatatacacactgcctggccaaaaaaaaagtcgcacaatctaatattttgttgcactgcatttagctttgattatggcacgcattcgtcctggcattgtttcaacaaccttatgcaacttcacaacatttatttccatccagagttgcattaatttttggctgagatcttgcattgaggagaggaaagtcggaccactccgtaaagtcttctccagcacatcccaaacactttcaatggggttaaagtcacgactctgtggtggccaattcatgtgtgaaaatgattcctcttGCTCCCTGAAcaactctttcacaagttaagcctgatgaatcttagcattttcatcctggtatatgcctgtgccgtcagggaagaaaaagtccattgacgggataacctggtcattcagtacattcaggtgctcagctgaatTCAgacctgaccagctgatgcaaccccagatcataacactgcctccagaggcttgtacagtaggcactatgcatgacgggtgaatcacttcatccatttcccttcttaccctgacacgcccattgctttggaatagggtacatctgattttatcagaccacatgacctttttccattgctccacagtccagtctttatgctccctagcaaattgaagtcatttttcccgattagcctcactaacaaatggctttcttgtggccacacagctgtttagtccaaatcctgtaagttctcgtCACATTGTacgtgtggaaatgctcttactttcactattaaacatagccgtgagttcccctgtcgatttttttacagtgtgacatcaccaagattTTTAAAGATCTCCAATCACGATCAAGATTTTTTGATCgtgactacatttctgctgtaaagttgacgggTCACCaatatccttccaggctttaataatgcactggacatttcataacccagatacgtaatctgccatgggtgtttaagaaatgagaagctacacactgcatcagttaaggttaaaagaattgttgccagctgaaacatattaatcactgcagtaatgatccaatcataggctcttaagtatttgcttatttaaacccaaacagcgaccttttttttggccaggcagtatatatatatatatatatatttgtaaaagtcaaagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37666 lncRNA upstream 224205 22582349 ~ 22585190 (+) True G31944
TU37582 lncRNA upstream 295382 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 323948 22481404 ~ 22485447 (+) True G31856
TU37451 lncRNA upstream 484058 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 487349 22317683 ~ 22322046 (+) True G31744
XR_004579611.1 lncRNA downstream 177115 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 366926 23177932 ~ 23187094 (+) True LOC113538428
TU38127 lncRNA downstream 644954 23455960 ~ 23458710 (+) False G32310
TU38129 lncRNA downstream 645064 23456070 ~ 23459381 (+) True G32310
TU38294 lncRNA downstream 705398 23516404 ~ 23560789 (+) True G32466
XM_026933585.2 mRNA upstream 81947 22604981 ~ 22727448 (+) False mast2
XM_026933586.2 mRNA upstream 81947 22604981 ~ 22727448 (+) False mast2
XM_026933588.2 mRNA upstream 81947 22658761 ~ 22727448 (+) True mast2
XM_034300927.1 mRNA upstream 81947 22682232 ~ 22727448 (+) False mast2
XM_026933587.2 mRNA upstream 81947 22688214 ~ 22727448 (+) False mast2
XM_034310314.1 mRNA downstream 216956 23027962 ~ 23043087 (+) False LOC113538154
XM_034310317.1 mRNA downstream 216956 23027962 ~ 23043087 (+) False LOC113538154
XM_026933025.2 mRNA downstream 216957 23027963 ~ 23045394 (+) True LOC113538154
XM_026933081.2 mRNA downstream 261115 23072121 ~ 23085157 (+) False orc1
XM_026933083.2 mRNA downstream 261115 23072121 ~ 23085157 (+) False orc1
XR_004579462.1 other upstream 207057 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 1791948 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2699170 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3272381 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3982475 18774770 ~ 18826920 (+) False G29569
trnaf-gaa_16 other downstream 664945 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1209372 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1841984 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1842179 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3802644 26613650 ~ 26629851 (+) False st6gal2b

Expression Profile