RNA id: TU38127


Basic Information

Item Value
RNA id TU38127
length 2727
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G32310
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23455960 ~ 23459381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atctgGTTTTAGACCAGATCTTTTTTGAACgtctaatttctttttttttttttttttgaaacaaaaaaaaaccttgaatgTCTGATTTTGAGATCTTTCCTGCTGAAATCAGATTTGAGAGAGCTGATTCCTCCAGTATCTGTTGTATATAACCTACTGAAGATGGCACAGTTAACCACGTTGACTGTTAATGTCTGAGAGATTAATTGTAGATCACAGTGCACTATCAAATATTCATGAGATCGTTGGTGGACATGGCAGTAGAAAATGTTGAGTTGATCTGAGCACGTGGGCTTCCTGCACATATCCGGGTCCAGATTAATGAGTCCAGATTACTAGATTAATGAGCGCTCGTTTATTTCTGTAACACTCGTCCCTGCATGACCCAGGATCACGAGTTGTACATACAGAAATAGCTCTATATtcaattcagatttatttttgtataacagtttTTGACGTCAGAGATTTAAGACAAGAAgtgcatgagaaaaaaaaacagcatgaggTCAGGAGATGATCCAGGTTTCATTACAAGAGGAATTTTTGCTAACTGCCCAAGTGACTGATGCCAGTTGTTGAAATTCACATACATGGGAGTGACTTGGGATGTCACACACTAGTATGAGGTATAAACCTAAAACATAGACCAGCAATCCATCAAAAATCTCAGAGGAGATGAACTGAAGAAGATCTTTTTCCTGACAATACCCCCCACTTTGTACTGTGATTAATCCCAAATCCTGCTCTAGTAGGATTGTGAAAAATGGAAATGGCATAGTGACCATGACAGACACCCTCTCATGATACTGTTCCATTAGCTGAAAACTACTGCTTACATGAATATCACATGGCATCAATCAACTATCTTACTTCCTTTCTTTTGAAATAAGTTggcattttttgttaaacattaaaaaaaagagtagacATTTTCTAAATCTAAGCTGCTTTTAAATAACCTGACTAGCAAAAACAGGCTGTTTTTTATTAGataagctagctggCTAGTAGGATTGTAACTGGAGTAACTAGCAGGATTGTAGTTGGAGTAGCCGAACCTAGCTAgtaggctagttagttagtaCGGCtctataaaatgtcttttatagTCTTAGTGTGGAATcccatctttattttatttatcactgcAGTAGCTAAACATTTCTTGCATAATTCAACTTGGATAGAGACCTCAAGGACCTTTTTTTGTAAGAGGGACCACAACGGCTAATCAGCAAGTAAGAACCATGGAAAATCTGACACAATTTGACTATGatattctgaagaaaaaaaaaaacgcttttaATTGTGGCGTAACTGCTGAGAGGTAATTGTGGTGTAACTGCTGAGAGGTAATATTTTGCTGCTGGTGTTGAATCAGAAGTGCTGGTAGGCATTTAGATTtgataatgcattttatttcatgacaTGGAAGCAAAGTGTGAGAAACAAGTGGCTTAGTGTAATGTAGAGCTTGTACAGCTTATTCAGTAAATTAAACATTAGTTTCAGACATTTTGTGGCTACATCAAGATGTGTTTTGTGCTGTATGTTTCCTTAAATGTGAGACCCCGTGTCCACATGTGAGACTAGAATTTCACACTATTTTTACATAAGAACTGTTGCAGTAGTGAAAAATGCTCCACTGGTCAATCTTATGTACATGATACAGAACGAGACGTGGTTCTGTACTCGCACAGAACTCGCACAGAACTCGCCCAGAGCTGTGCTTCATGTCAAGTTTTTGTTTGCACTGCAGAGGTTTTAACACTGAAAGCAATGAAGtggtggtgatttttttttttttaacatgtaggCTTTATGGACTTCTCCTCACTCTTCCTGAATCATACTTCCAATACATTTTTTGACAATATGTCTAATGATTAGAACGATGTACTTCTAAGATTTTTACGAATCTTACACAAGCAATACAGGGTAATTTTATTACTTGTCTTTCTCCAGATTAGGTCTGGACATGCTGGTGTTTTTTCTATGTATACCTAGTGATTTGTGGTGGTTTTTAATATTTAGAGATGAGAGCTCTGCACATTTTGTACGTAGCCTTTACTGCATTACTACATCATTGGGTTTATCAGGTGCTGCATTAGAGGTCACTCGTCTTCGTTTAAAGGGATACTTGGATTTGAGTTCAGTAAGTATGTGGCATGTGGTAGACGAATACTTATTTATTGTTTGGCTGTATTAAGAACTACACCAAGCATTTAGATGTTGACTAATCCCCAACCTCTCAGTAGACATCCGTGCTTTCTGTATTCTTACTCTATGCATATCTAAAGGTAATCCCTGCCTTcctgcagtgcagtgcagggtTGCACCGTGCTgctccttcctctctcttcatATCATCTCATCACATCTCTCACCACTAACATCAGTTTTTAACCCGTCCTCACTTTTCACTCATCCTCGAACGGCTGTTTTTGAAAGGGCTATCTTTTCCCTCATGTGGAAAACACATGAGTGGAAGTGGAAGTGGAAGAACGAGCCGGAAGCTGACGTGGAAACGTACGGCACTCCTTCCTCACGGCTGTGCACTCTGAGAGCAGAGCGCCCCCTACTGATCCCTCCTACAAAGCAGTACTGCTGACTTGCCTGTACGCTGGCTCCCTCTCACCCTTGGTCTTTTGTGATCTGTGAATATAATGAACTCCATTTTGATTTTCCTTGTGAGATCATGTACTACTTGAACAAATGTCCAGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403844.2 lncRNA upstream 268866 23177932 ~ 23187094 (+) True LOC113538428
XR_004579611.1 lncRNA upstream 429461 22988121 ~ 23026499 (+) True LOC117599173
TU37722 lncRNA upstream 644954 22809395 ~ 22811006 (+) True G31979
TU37666 lncRNA upstream 870770 22582349 ~ 22585190 (+) True G31944
TU37582 lncRNA upstream 941947 22504504 ~ 22514013 (+) True G31878
TU38294 lncRNA downstream 57694 23516404 ~ 23560789 (+) True G32466
TU38297 lncRNA downstream 72592 23531302 ~ 23560789 (+) False G32466
TU38290 lncRNA downstream 91639 23550349 ~ 23560789 (+) False G32466
TU38296 lncRNA downstream 94937 23553647 ~ 23560789 (+) False G32466
XR_003403819.2 lncRNA downstream 102012 23560722 ~ 23562633 (+) True LOC113538216
XM_026933514.2 mRNA upstream 2297 23277943 ~ 23453663 (+) False lrp8
XM_026933515.2 mRNA upstream 2297 23277943 ~ 23453663 (+) False lrp8
XM_034299658.1 mRNA upstream 3990 23386793 ~ 23451970 (+) False lrp8
XM_026933516.2 mRNA upstream 3991 23277943 ~ 23451969 (+) False lrp8
XM_026933511.2 mRNA upstream 3992 23277943 ~ 23451968 (+) True lrp8
XM_034300049.1 mRNA downstream 37038 23495748 ~ 23530384 (+) False il23r
XM_026933597.2 mRNA downstream 38918 23497628 ~ 23530384 (+) False il23r
XM_026933596.2 mRNA downstream 51120 23509830 ~ 23530384 (+) False il23r
XM_026933594.2 mRNA downstream 51188 23509898 ~ 23530384 (+) False il23r
XM_026933598.2 mRNA downstream 52771 23511481 ~ 23530384 (+) False il23r
XR_004579462.1 other upstream 853622 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 2438513 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 3345735 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3918946 19534441 ~ 19537014 (+) False smx5
trnai-aau other upstream 4638485 18817402 ~ 18817475 (+) True trnai-aau
trnaf-gaa_16 other downstream 17241 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 561668 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1194280 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1194475 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3154940 26613650 ~ 26629851 (+) False st6gal2b

Expression Profile