RNA id: TU38296


Basic Information

Item Value
RNA id TU38296
length 4290
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G32466
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23516404 ~ 23560789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCACACACAACCCAATATGAATAGACCATCTTTTAATTATAGACAGAGGTCTGAATAATAGCAGGGTTAGAATTCACACAGTTTCATAGCACTCAGTCATTACACATTGGACAGCTGGCATTTCTTTCAGAACAAATATGCAGTAGTGCTGTTGTAAAAAGCAATGGGGCAGAAGAAAAAcctaaaaatgaattaaaaactaaactGCTTTGTTTGAATAATCAGAACTGATACTGGTTCAGGTAAACAGGAGTGCACAATGTAAACTAGACTTGAAAAAACCTATAAAGGCTGTGATGAGTGAACGCACCATCCTCAGAGCAACCAAAGCCACTGAAATTCAAATACAACATACTGAATCTCACAATGGCCAAATAAGTCAAACTCAGGGGACTTCTCAGATTATCATTAGCAATGGTGAAGGCAGACAAATCAAAGATTTTGGCCTTGAGCTACAAATCATGTTACTTCACTGAGGATTTCAGAGCAGAAGCTGCTAATGACAAAGTCTTTAACCCAAATCTTTCTCTGCAACAGTTGAGTGATTCCCAGCCGTGCATCTAAGGCTTAAGTAGAAAGTAAGCCAAAGGGCACCACAATCTAACACACCCCTCACACGTATATTTGGAAATGCATATATGCAAGCAGCAGTACAAAAAAGGTATTCGTTGAGAATGCATaatgtctggggaaaaaaaaatactgtatgaaAACATCCCTGCTACTTTATTTCTGAATACAAAACCTCTACCGATAATTTGCTTCTGAGTAGCAAGAAGTcctttcaaatttttttttttttgtaagattttctccttttttctaaAACAAGTAAAATTCAGTCCACAAGAGGTGAGTGGGATGGATGACAGTCTTCCATCATATCATCTGCTGAAGGATCCATTAGCATGCAAGCCTCGTAGCGAAGGGCCCGGGGAAGCAGGGCTCAGTGGCAGGCTGATCAGAGCTACCCGTCAGGAAGCTTAAGCCAGAGCTGGAAAAGCCTCCGGGTCGTCCACATTGGGGCTCCTCTTCCTCCACGGGGTCCTCCGCGGCCACGTCCAGGGCGGCCCAGGTCTCCAAAGTTAATCTCCAGCTGGGACGTGATGTCATTGGCAGGCTTGCGGAAGTGGTGATCACCAGCAGCATCATCTAATGGAGCCTGATAGAAACAAGAAAGcagtcattttcatttcatttaaacaagACTGTTTTTAATCTTCAAAGCAAATCTTTAGTGGTTTGAGATTCTGACCCACTACAGATTACTGGGCTTTAAATGTTTGACTACTGCCCAACTGCCTTTtgtaagcaacacacacacacaaaatatacatcCTTACATCCTTGGGCTTGGATTTGTGCAGCAGGTATCCTTTCTTCCAGTCAGTTCCCTCGTTGGCCTTGCGAAGGTTGAACTCAACCTTagttctttctttgtcctgctgGGCTTTCCATTCATCCAGGGTCATCTCCTTAGGCCCTTCCTCTTTCACCTCCTCAACCTCATTCTCCCTGAGATAAGATCACATTGAAAGGTCAGTGTGCCTCTGGTGAGTTTATTAATGGGTGAACGAATCACTACCCTGATCCAGATCTTATGTGATCAGAAATTACAATCAATTTGCATGATTAAGTaatctctgtataaatcacaggtATTGGAACGTCTTCACAAATGCATGGTATGCATGGTCATCAGACCAAAGATTCTATCTATGCTACATACACCTCCTgttaatacaaactgattgttttcACTTTTATTGTAAGTGCCTGTTGTAGTATGTGTGGCTGCACAAGCTGTACAAACTCACCTAAACCTCCGTACTCCAAACAGCTGGCTTAAATGTTgtccttattttatttctccccATTTTAACTACTGTCAATATCTGGTTTCAGTGGGAACTCAAATACACCAGTAATTACATTACTGCTCCTCCCCCTGTAAAGCTAATGACTTTACACTATAAAAGGTTATCACTTCAGAGACAAGCGCTATTTCATTTCTAATCTATTGCTGTTTGTGCAAGAGCCTCCACTTTTCTTATACATACAACAAAGCTGTATATTCAAGATAGAACATTTaagaattaaaacatttcatagaTTCAGCCCTTGTACTAGGAGATCCAGAGAAACACTGTAATTAGAGTCCTAATAGAATAATCAACAGACAAATAGCATAAACCAAAAGCAGTATACACACTTGTTCTCAGAGTCAGCGGGCGGGTGCTCCTCTCCCTCAGGGGTCTCCTCTGTGACATTTGACTGGTCAAGCTCACTGTAACAAGAATAAAGGCTTAATCAACCAACCAAAGATGCATAACGTGCAGCATGCATTAGTGCTTTTAGATATGAAATTCAGTTGATGTGTGGTTTGTCAAGCAGAACGACTTAGACCGGAATGTGTTAGGTTTAAACATACACAGCAAGCAAGATTGATTTGCCAAAAAATcaacagtgaattttttttgcctctCCACTGGGGAACTACAAATAGCCCCGACAGCCCGCACACAATCTACTCGACCCAGATTAGTAATATTGCCACCCTGAGTATGAGTGTGATGCTCTCCTGCTGCTGCACTGACCTCAGTTCGTCCTTGACAGTGCCCCAGTTATGagatcctcctcctcctcgcttCTCTTCTGGTTTAAGGCTGCTGAAACAAACACTCAGATTTAACTTCAATGATTGACTTCTTCATCTCAAACCAActtaatcaaatcaaaattcAAAGAGATTTAGAGTGGTTTTAAAGGCACTGGAATCACTTACGACCGGTCACTGCCACTGTGTCTGTCGAATTCACGTTTGCCACGCGAGTCAAATCCGTCACTGCGGCCCATGCCTCTGCCTCGACCTCCACGGGCTCCTCTGCCGCCGCCACGGCCTCGGAACGGCCGCTCACCAACAGACCTGAAAAGAACAAACAGTATAATCTATGGCTAGTCTTGAGGAACACTTGCATTTCAGATTATTACATCACCCCCTTACTTTAGTGTTCAGAACATTAGGAGTGATATTCAGATCCACAAAACACCACTGTAATAATCTGTGAAAATTAGTGTTTGTAATGTTATAGTTTTTAGACGTATAATAGCCATGTTTTAGTGGTACTGCAGTAAAAGACACCCGTCTTTGTTTCAGTcttctatttacatttttctggcccagaaattagctcctCCCCCAATCAGCATACACCTGCTCCTCTCTACTACttttccataaaaggcaaacCAAATCATATCACAGCAGAAGAGGCGGAGTCAGTCAGAGGGAAAGGGATGTCCACGTTAATGTTTTCACTATAACTTATTTGTCTATTAGCCGTTTTTATACATCTTGACATTAAAACTGAACAATTTTAAAATCTCGGAGTTAACATTTTTCAGTTTGATGATTAggcttgtttatttttatatggaaATTCCACAGCCTTTGCATAATTTCCCACATCACCAGTTCAAGCTACACTAGAGCAAGGTGCATTATGACGTACACACTATTGCTCATGTATTAGGCTCAGCATTGCACACACATGATTAACCATGTTGTGAAATTAGTCAAAATCTATATGTATTCTCAGGTATGCTTGTGCAATCTGTCAGTTATAACACAGAATATATGTTGTACATCTAATTTCTTAAAgtcttataaataaattgataaaaagaaAGTCTCACTTGTCCACAGAGAACTCTCCACCCTCGGCTGGCTTGTCCTCAGAGGGTTTATCTGATCTGCGCTCGCGTGGAGGCCTTCTCTCAGTGCGTCTTTCTGCCTGGGGGCGACCCTCGCCCTGACCCCCCtgcggctgctgctgctgctgctgctgctgttgttgctgcggTTGCTGCTGAGAGCCCTGCTGAGCCTGCTGCTGCTCTGGCCGCCGGCCCATCCTCCTCATgCCTCCTTCTTGAGAGGAACAGGCGTCGTGGTCTCTTCCTTCTTCTCGGGAAGAGGGACTTTCCTGTCCTTCTGCGACTCCTTCTTGGGCTGTTTGGCAGCCTGCGCCGCGGTCTTGGCGGCCCCCGGAGCGGCCGCGTCCTTCTTCTTGGTCTCGGCCTGCTTTAACACCTCGAACGGATCCTCTTCATCATCAAATAGCTGGTCGAACCGATTGGTTACGACACAGCCGAAGCCTTCTTGCAGATGTCCGGGCATGATGGCGCCCCTTCAGCAGGATTCTCCTCCGATTCTACGAGGCTTGGTGCGAACTTCTCGCTGCTAGATGCCACAAGATGGCTAGAAAGGACCTTCGCTTCTCTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38129 lncRNA upstream 94266 23456070 ~ 23459381 (+) True G32310
TU38127 lncRNA upstream 94937 23455960 ~ 23458710 (+) False G32310
XR_003403844.2 lncRNA upstream 366553 23177932 ~ 23187094 (+) True LOC113538428
XR_004579611.1 lncRNA upstream 527148 22988121 ~ 23026499 (+) True LOC117599173
TU37722 lncRNA upstream 742641 22809395 ~ 22811006 (+) True G31979
TU38343 lncRNA downstream 54074 23614863 ~ 23615065 (+) True G32502
TU38347 lncRNA downstream 89845 23650634 ~ 23653480 (+) False uhmk1
TU38351 lncRNA downstream 102165 23662954 ~ 23666933 (+) True LOC113538279
XR_003403831.2 lncRNA downstream 102219 23663008 ~ 23666500 (+) False LOC113538279
XR_003403832.2 lncRNA downstream 102219 23663008 ~ 23666500 (+) False LOC113538279
XM_026933126.2 mRNA upstream 1703 23533178 ~ 23551944 (+) True il12rb2
XM_026933596.2 mRNA upstream 23263 23509830 ~ 23530384 (+) False il23r
XM_026933151.2 mRNA downstream 72817 23633606 ~ 23653555 (+) True uhmk1
XM_026933019.2 mRNA downstream 275545 23836334 ~ 23839590 (+) True rgs4
XM_026933496.2 mRNA downstream 998144 24558933 ~ 24567675 (+) True LOC113538433
XM_034311017.1 mRNA downstream 1007786 24568575 ~ 24570619 (+) True LOC113538193
XM_026933575.2 mRNA downstream 1014892 24575681 ~ 24588531 (+) True rtn4a
trnaf-gaa_16 other upstream 77624 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 951309 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 2536200 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 3443422 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 4016633 19534441 ~ 19537014 (+) False smx5
TU38551 other downstream 459589 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1092201 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1092396 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3052861 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 3069805 26630594 ~ 26648369 (+) False st6gal2b

Expression Profile