RNA id: TU38351


Basic Information

Item Value
RNA id TU38351
length 1481
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC113538279
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23662954 ~ 23666933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttgccttttatggagttttgtaggcgtcgctaaatgtaaatcagctgtgccgtgCACGCGCTTGGTAATTGGCGGCTGATTAGTGTATATATAGGCTACACATGCGTATGAACAAAGTCAGAGACGCTTGTAAACGTGGCGGGGATTAGTAGTTCAGTTTGGCCaacgaaaacatttacacaccacTTTACTCAAAAAATGATAACTGAGGCCATTATATCTAATACCACACGTCTTAATTTAATCAGGTGATATACAAGTCGCTAATAACTGGTCCAGTTACATCACTGTGTGTGGTTTCTTTGTGCTTATCTGAAGTAATTTGTTGCTAACAGTTCAGTAGCTCACCTCAGAATGCTTCTTGTAACAAAACCAGTAAAAAAGTGAAGACTGAAAGGGAAGAAAAAGACTTGGACAGGGCAGAGCTCCAATATTTAGATGATTTTTTACATCTGGTGTGTTTGGTACGTCGTCTCTATCCTCAGGAGTTAGCGCTGCTTGatTTTGGTCCAGATATTAGTGTCGTTCCTGTTGTAAAACCAGCTGCTCTGCTTTTCCTTAAAAGctacacacaCTACTCCGGAgttaccagtgatcctgacgaCTCCTGCTATCCAGTCCTGCCTTCTCTATCGTGATgtcccacatggacagcctaaaaaTCATCATGATGGTTCTGTGAATGGTAGCACAGAGACACCCTAAGGATGGCTGTGGATATTCTTCCTTGGCTAGCCTAAAGACTAATTTCTAcgaacagtttacactcaagtctccatcatggaacagttaataacttcagtttgatacgacaaacttaaagttaaaactctaatgaataCAGAAATGATTGTAATGCTCATActaagttcctgttaacacactTGGCaatttttgactatatagtgtacagttaTTGAAGAGAAACTATTTAGAATCACattatccagtgtcacccagatgagcaTGGGttttcttttgagtctggttcctctcaagttttcctcttgtcgtctcagggagttttttccttACCACCATCACTTccggcttgctcattagggataaagttacacatttaaaatctatatttggaatgtatgtatttctgtaaagctgctttgtgacagtggcCATTGttaagtgctatacaaataaaatttaattatgtgATTGGACATTTGTTATTGTTGACTTTTTCCAAAATACAGATTAGAGTGtttccctccatttttttttttttttttttcactatttcagGCTTATAACAAATAATTTTGTGGAAATGCTATTCTTCTTTTGGAAGTCATATTTGGATTGGACTAGTATTTCATGGTGGTGTAATTATTAAAGGAGTGTCCAAATCAATCATGTCATTTTTACGGACTGTAATACTTTTGCTGTAAATATAGATAATATAGTACAATAcagattatactgtattttatctTCTATAAAATGAAGAGTAGAATTATCA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38347 lncRNA upstream 9474 23650634 ~ 23653480 (+) False uhmk1
TU38343 lncRNA upstream 47889 23614863 ~ 23615065 (+) True G32502
XR_003403819.2 lncRNA upstream 100321 23560722 ~ 23562633 (+) True LOC113538216
TU38297 lncRNA upstream 102165 23531302 ~ 23560789 (+) False G32466
TU38526 lncRNA downstream 277306 23944239 ~ 23944460 (+) True G32662
TU38656 lncRNA downstream 593060 24259993 ~ 24260377 (+) True G32782
TU38672 lncRNA downstream 667266 24334199 ~ 24334455 (+) True G32795
XR_004577268.1 lncRNA downstream 982085 24649018 ~ 24650283 (+) True LOC117596090
TU38761 lncRNA downstream 987456 24654389 ~ 24656248 (+) False LOC117598985
XM_026933151.2 mRNA upstream 9399 23633606 ~ 23653555 (+) True uhmk1
XM_026933126.2 mRNA upstream 111010 23533178 ~ 23551944 (+) True il12rb2
XM_026933594.2 mRNA upstream 132570 23509898 ~ 23530384 (+) False il23r
XM_026933019.2 mRNA downstream 169401 23836334 ~ 23839590 (+) True rgs4
XM_026933496.2 mRNA downstream 892000 24558933 ~ 24567675 (+) True LOC113538433
XM_034311017.1 mRNA downstream 901642 24568575 ~ 24570619 (+) True LOC113538193
XM_026933575.2 mRNA downstream 908748 24575681 ~ 24588531 (+) True rtn4a
XM_034310175.1 mRNA downstream 986060 24652993 ~ 24656218 (+) True LOC117598985
trnaf-gaa_16 other upstream 186931 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 1060616 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 2645507 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 3552729 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 4125940 19534441 ~ 19537014 (+) False smx5
TU38551 other downstream 353445 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 986057 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 986252 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 2946717 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 2963661 26630594 ~ 26648369 (+) False st6gal2b

Expression Profile