RNA id: XM_026933076.2


Basic Information

Item Value
RNA id XM_026933076.2
length 6371
RNA type mRNA
GC content 0.46
exon number 15
gene id trak2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25756814 ~ 25784890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCTATTTATATACACGTTATTCAGTGTCAAGTGtacagagtttgtgtgtgtgtatgtgtatgtcaaGGTCAGAGGAATTTATTGCTGGTCCCTTAAGTGCATCTGACAGCAGATCCAGGGCTAAAGTCACGGGATCGAGGGATGGAGAGTgggggagggagggaaagagagacagacggagagagaaggaaagagaggagCAGCAGCCATGGCAGTTTTAAACCTTCAGAATGAGGAGCTTTATGACTGTTTTGTTGCTGAAGcTTTTCTCACCCTGGagccctcctcttcctcctcctcctcctctctctcccgctCTCACACTTTTTCCAAAGtTCTCACCTCTGACCGCGTGGAGCAGATGACCAAGACGTACAATGACATCGAAGTGGTCACACACCTGCTGGCCGAGCGGGATCGGGATCTGGAGCTGGCTGCTCGGATAGGTCAGTCTCTGCTGCAGAGGAACCATGTTCTTCAGGAGCGCAATGACTCGCTGGAGGAGCAGCTCGCGCAGATGCTGGATCAGGTCCATCAGCTGCAGCATGAGCTGATGAAGAAGGACGAGCTTTTGCGAATGGTGTCAAGTGTGAGtgaagagagtgagacagactcCAGCTCGTCTCCATCGCTCCCCCTTGCTccctctaatcacacactcacacacacactgacactcagcCAGCTGGAGGTGCTGCAGAGCAAACTGCAGGAGCTCGAGGAGGAGAACCACAAACTACGGGTAGAGGCAAGTCAGCTGAAGAGGGAGACCATCACATATGAGGAGAAAGAGCAGCAGCTGGTCAGCGATTGTGTTAAAGAGCTCCGTGAGTCGAACACTCAGATGGTGAGTCTGACTGAAGAACTTTCTCAGAAGAACGAGGATCTTATGAAACAGCAGGAGGAAATCTCCCAGCTCCTGTCACAGATAGTGGAGCTCCAACAACGCCTCAAACAGTTAGCACTGGAGAAAGAAGAGCTGAGGATTCATCTGCAAGCCTCAAAGGATGCCCAGCGACAGCTAAccactgagCTAAATGAGCTGGCCGACAGGAATGCGGAGTGTGTAGGGATGCTGCACGAGTCTCAGGAGGAGGTTAAGGAGCTGCGCAGTAAGAACACTCCGTCTGCAGGCCTGCGCAGGCATCTCTCTCATAGCCTCTACCCCATGgAGTGCCTGGCGGCTGAGATTGAAGGCACTATGAGGAGGGAGATGAGTGTAGAGGAGGAGATTGCATTTCAGGACCAGAgGTCGAGCCATAAGCGTGTGTTTCAGACAGTGAGGTCAGCGAATGAGTCAATAATGCGAGCAGCAGCAGGGACACATCCTATTCCTGGGTCAGGGCACTGCAGTGTGGTGATGACGTCACAGCCGTttcactccaacacacaccccacaccTGACGGAGACATACAGCACGGCACGGACAATGCATATGTGGGCCGCCCCAGCTCTCCTGGAGGAAGTGACCTCGTCTCTGCACTGCGTCGCCTCACTCTGAGGAGGCAGAACTTCCTGTGTGAGCGTCAATACTTTCAGGCCGAGAGGAACAGGAAGCTGCAGGAGCTCTCAGACGCGGTGGAGTCAGAGGGTGGCGGGAGCAGCTACAGCTCTCCAACGGGAAGCGTCCGTTCATCCTTTTCCAACCTATCAGAGTTCTCCGTGTCCTCCAGCTGCTTTAAGACGTTTTTGCCCGAGAAGCTGCAGATTGTAAAGCCCATGGAAGGCTCTCTGACCCTGCACCACTGGCAGCAGCTGGCAAAGCCTCACCTGGCCTCCATCCTCGACCTGCACCCAGGTGTAATCACTAAGGGCTTTAGGCCCCTCCCCCAGGATGCTGTGTATCACCTCAACGACctggaggaggatgaggagaacGACAGAACTCCATGGGTGGACATCACAAAGAAGCGAGATGAGAGGAAGATGGGAGAGGAGGGTGATGATGAAGGGATCACGTTCAATGTACACTCATCCTCTACTCCAGAGGGAAGCAAAGAGAGGATTTTTTTCACACCACTTAAAGCCCTGCCTCTTTCGCCATCTGTAAGAGCGTCTCCTGTCTCACTGGCTGCAGCTGTGACCTTTGACACCTTAGTAAAATCTGCGGCAGGGTCGACGGCTCTTCCTGTGTCCCAGCCAAGCCTGAGCGTTACTACAACAGCGCCCTCTATAGcagTGAATCCTGGTAAGTGTCAGAGCACCACCTTCTCCACCTACACCTTCACCACCTGCCGCATCCTGCACCCCAGTGATGTCACACAGGTCACACCCAGCTGTGCATCCACCCCGAGTTCCCTCCGCTCCGTTCCCTCCACCCCGGTCACTCCATGCAGGTTAAGTCTGGGTGACTCGTTTCCTCCTCGTCGCACCACAGCTCCCCCTACTGGTCTGGCTAAGCTCCTGTTAGAGAAAGGTATCTCTGCCCAGAAAGTTCCTGCTCCCTCCAGACTGCCCCAGCCCCTGCACCTGCCACCCAATACCCCTCCCAACTCCCCATGCCCCTCCCCTGTACCCTTCGAGTCAACCTCCACAATTCCTGACAACTTCCTGGCATCGCGGCCAGCTGAGCTCTTCCTGCAGGACGTATACGGCGTGAAACCCGACCTCGTTGAGCGTCTGCGCAAGCTCGGATTGGACAAAAACATCATTCGGACAGACTCAGACACTGCTCACCAGTCATCCACTCTGTTACCGACAGGAGGAGGAAGCTTATTGGTCGGTTTGAGGCGGAACCAAAGCCTGCCTGCTATGGTTGGTCAACGCAGCCCATCCTACCCAGCTCCCCCCCCTCACCCCACCTCCCTCGCTCTGCCTACACCATCCTGGGGTAACTTGAAACCACAGCCTACTCGTAGACATGCCTCCCTTTCTCAAGCTCCTCCTCTTCCATATGAGCATTAAAGAGTTGTTCGTGGTTTTGGGCGAAAAAGGGATTGGTGATTggatgaaaatatattttgtggGCGTCGCCGGGGGGGTGGAATAATCACTGACCTTTCTTAACCTTTGCTCGCCTTCCTATAAACTAACAATAGACTAAAAGGCATGAAGAAGAGATGGCCGCTCTTTTGTTgtggtttattttaaaaagcacaattgTGTAAATAGATTTTTGGCTTAGTTATAGGCCTAGTTGTACGTAGCAGCAGGAAATATTGCATGTCCTGATTTGACCTGGGTCAATAAGGGTGAAGCTTTAGGGGTGGATCTCACTTGAGCACATtagcttttttccatttaatgtAGCTTGAAAATACTGGTTTCATCACATAATATAGTAGAATATGTAATGTTAGCTATCTTGCTAGCAAACTCGACAATATGTTAGCCTAACTTTAGCTAGCATCCTAGCAAAATTGTTTCCAGGATCTAATCCCGCATTATAATATTTAGCTCCATGGTATCTTTGTAAATAGCTTACCTAACCATAGCTAGCTTGCTAGGAAACATGACTAGCTATGTATGATTATATGGCTACTGTTTGGTTAAGAGGTAGTTAGTGGGGTAGCTGGCTAATGTTAGAACAGTTATGTATTTAGCTAGCTGCCTATATTAGCAAATTAGACTGGattgtgtaaataaaaccaATATTTTATGCTAAGCGCCGCCCTTGTTGACTCAGGAATGAGGACATGCAGGAATCATTgatcaaaattttatttttccccattaaaTATGACTATTTTGCTTTCACAGTTCACTCTTTCCACATTGAAGCAGTCATTCTCAGTCTTTAACCTCAGCTGAAGTCACGCTGTACGTTTATCCACAAGGCTCTGCAGGTTGAGAAAGGTGAGAGAACGTCGATCAGGGATACTGCACGTAGGGTGGAGTGATCAAGGGAATAAGGAAAGTGTTATGGAGTGAAAATTAGCAGTTCACATGTGGATTTATTAAAGTATAGAGGGTTTGTGGTAAGTCGAACAGGAGCAAGATAAAGATGGATCATGAAGGTGAATTGAAGGAGATGAACATGGGATTAAAAAGTAGAATAAGAGAAATAGGAATAAACGAAATGATGAGCTTGCAGAGCCTCAGGAAAGAAAGCGTGTCAACATTAAGTAGTACTTTAATTCAGTGCCATCTAGTTTTAGTATTGCTGATGTTACTGTGTCTACAACTCCTCACCCAGCATGCACCTCTGTCTGGTATTCTAATCATAGTTTTAAACCCTAAAGCACATTTTACAGTGGGATTTCATGATCACTAGTCTATCAGggatttaaaggtgcattagatAAGATTAGACTTTTTTATGATTGGGCCTCTAAAGATTAGGTAGGTTCAGCATTTGAATGCTGTctgcccatgttcacaaagTTCCGCCCCCAGGATATCCGTTGGCCTGTAGAATGTCTATATAATGACTGACTGAAAGCATATCCaaccacaaacaagcattccagcCTGGAAGACAGTTTTCCAAATGAGTTTTCTCTGCgacttaatacacttttgctCAGGCCATGGCTTAAtccattgtttgtttgtttttatcatgCTCTACATATCATTCAAGTTACTTGTACttgtgaggaataaaaaaaattgtctatCGCAACTTTTAAAGCTGCTTGAAGAAACAGTAATTTTAGGGACTTTATGTTCAGGGAGCGAGAAGAGGGTGGGAACATGCTCGTCttgcatatttaatttgtattgtGTTTATTCTAAAGGGAACGTGCACCAGTTTGccttacatttacacacacacgcacacacacacacacacacggtggcACAGTAGCTCAATCCTGAGATCGCGTTACTGTCTGCCTGGAGAATGCATGTtcccgtgtctgtgtgggtatcggctgggttctccggtttcctcccacttcccaaaaacatacccataggtggactggctactctaaattgcccctagttgtagatgagtgtgtgaatgtgtgtgcatggtgccctgtgatggactggtgtcccatccaggttgtAGTCCTGCCTTGGATAGGCTCCGGAtacaccacaaccctgaccaggtcATTAACACTCTTCATTAGTACTACTTCagtacagtgtgctctgattggctgagagcagtaacACATAACGCACAAATATCACTATCGGTACAAACCAATCCGAATGGTATTTTCTCCTGACTCTCAGTTGTGACTCTGTGACCTTCCACCATCGCCTTtgatgtttcttctttttcccccattcaatgcactttttattttaacccACTAACATAATGATATTTATTACTAAATGACCATGTAGTATCTACAAGCAAGAGAATATAACCATAAACTAGTGGCATGAAGTAATTTTATTAAGCACTTTTATTTAGCAGAGGTATTTCATAATATATGTTGCttatgaatttatttctgtGAGTTTAAAAAGGGATTCACTTTCAAAACCTTTTTGTCCTGGTCCAAACCAAAAAGAACATCATTTGACCAGTGTTTTTGCTGGTTGGgctttattactgttattactgttactgttattattattactgttattattctTTTGTGTAAACTAAACTTGTATGTCTGTTGTTGCCAAGTCTTGCtttttgtgccatttttaaTAGTCATTGGATAATGCACTGAAATGGGGCGGGGCTTGTAATGTCACCAAGACATCGGCTTTagatatttatcatttaatatagTGGAAATAATTTGCTGAATGAATTAATTGCCATGTGATGTACTGTACAGGATTTACACAATGTTGGAATTATTGCAAAGAATGTAGTCtggcactggagctacaaggctaatgttcCTAACAAGTACAAGGCCTTTtctgtgtatacatacacaacTTTTTATATACTTGCTTAaatcacattaataaataacaatataatttttaaatacaccATTTTTAACAAATACTATAGATAGTATAGCCTGCAATTAAGAAAATTAGGTTTAAAGTTTAAACTATAGTATACCATCATCTATCATCATCACTTTCAGCTTTCTGGTGGCTGCTTTCAAACTTTCCGACAATTCTGGCTGTCCAAAATGGCTGCCCATGGGCGatattttgttcatgtttatgggTTACAAGAAGTCCCACTGTGTCCAAATAACATAtttttggaaaagattttgcATGAGAAAGACTAGCTTTGTAGCTCCAGTCCAAAACTAACACAGTTGGACACAGAACATGTCTTAGCTGGCATCGCACCGCTACTCTCCTCATCCTCACGTCTTCTCAGTCACTCAGGATGACCGATGGAGATGATGTGTTTGTGATGACGTGTTTATGATGTTCATTTGATAAGCACAGAGATATGACTGTTGCCTTGTCTAAACCCTGATCAGTGCTGTTTTGTtgcctccttttttttaaataaagcaatgacaaatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39156 lncRNA upstream 57297 25707552 ~ 25708111 (+) True G33256
TU39153 lncRNA upstream 59906 25705192 ~ 25705502 (+) True G33253
TU39152 lncRNA upstream 61916 25703270 ~ 25703492 (+) True G33252
TU39151 lncRNA upstream 64159 25700905 ~ 25701249 (+) True G33251
TU39150 lncRNA upstream 65668 25699413 ~ 25699740 (+) True G33250
TU39235 lncRNA downstream 140436 25925326 ~ 25928437 (+) True G33315
TU39252 lncRNA downstream 169979 25954869 ~ 25956247 (+) True G33331
TU39254 lncRNA downstream 173023 25957913 ~ 25972390 (+) True G33332
TU39286 lncRNA downstream 256945 26041835 ~ 26042300 (+) True G33352
TU39271 lncRNA downstream 305727 26090617 ~ 26095344 (+) False G33340
XM_034310175.1 mRNA upstream 1109190 24652993 ~ 24656218 (+) True LOC117598985
XM_026933575.2 mRNA upstream 1176877 24575681 ~ 24588531 (+) True rtn4a
XM_034311017.1 mRNA upstream 1194789 24568575 ~ 24570619 (+) True LOC113538193
XM_026933496.2 mRNA upstream 1197733 24558933 ~ 24567675 (+) True LOC113538433
XM_026933019.2 mRNA upstream 1925818 23836334 ~ 23839590 (+) True rgs4
XM_026933011.2 mRNA downstream 5074 25789964 ~ 25793678 (+) True LOC113538142
XM_034312040.1 mRNA downstream 35994 25820884 ~ 25840241 (+) True LOC113538280
XM_026933218.2 mRNA downstream 35995 25820885 ~ 25840241 (+) False LOC113538280
XM_034300146.1 mRNA downstream 70973 25855863 ~ 25969370 (+) False caskb
XM_034300144.1 mRNA downstream 70974 25855864 ~ 25969370 (+) True caskb
TU38758 other upstream 1111443 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other upstream 1111443 24653185 ~ 24653965 (+) False LOC117598985
TU38551 other upstream 1744372 24020378 ~ 24021036 (+) True G32684
trnaf-gaa_16 other upstream 2289385 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 3163070 22598341 ~ 22602338 (+) False tmem69
XR_003403845.2 other downstream 828760 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 845704 26630594 ~ 26648369 (+) False st6gal2b
XR_003403829.2 other downstream 1984906 27769796 ~ 27787602 (+) False adam23a
trnar-ccg_4 other downstream 2387752 28172642 ~ 28172714 (+) True trnar-ccg_4
trnas-aga_1 other downstream 2468580 28253470 ~ 28253551 (+) True trnas-aga_1

Expression Profile