RNA id: TU39875


Basic Information

Item Value
RNA id TU39875
length 3157
RNA type TUCP
GC content 0.43
exon number 4
gene id ecrg4b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26630829 ~ 26638538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCTTATTTTAGCTCATACCACACAGCCCCAGCTAAGCTACAAGACCGAAGACATGAAGCTCTACAGCGTTTGTATAAAAGCTTTGctcttcctcatcttcctcatcctctGCAACACCTCAGGTGGATCAGGTGAAAGTACACTGAGCAAGATACTGAAGAAGAGGGATGTCCAGAGCAGATCTGCAGACGAACTCGTGGTCTCACAGGTAAAAGCTAAGGAATTCCTGTCAGCTCCCCGGAGACCTCGGAGAAACCTGTGGGACCGCAGCCGTCCAGACGTGCAGCAGTGGATCCAGCAGTTCATGCACATGGGTTACGATGAGGCTAGGCTTGAGACAGATCTCGCTTACTGGATGGACCATGCCAAAGCTAACGATCAGGGTCGGCAGCATCACTACGATGAGAGCGCTGCAATGGGACCGCGGGATGCCAGCGCCTTCAGACATGGAGCCAATGTCAactatgattattattaatcataatctcctgattaataaatgagtagttctctttatatttttttgtcttcttaataGGCACAGCGAATAAATCTATGCCTTCTTCTATAGGTCATTGTCTAGTGATGCACATTACAATTGTGTCCATTTTGATAGTGggacttttttaaatcaatttttttttaaaaagtaaatactaaagttttaataaagaaattgcATCCACAATTGTGATTTGTGTTaacaaaaaacaactgaaaagaTAATCTGACAATTTTAATACACAATTTGAACCCAATGTTGAGTTGCCCTTAAAAAATGGAGCTATTTGCTAGCAATTAACatagaaaagcagaaaaagaaacacacatacaataaaaCTTCAGATTTCATGCAGCAGGCTGAACTACATCACCAAATGAACACCTTGTATTAACCAACAATGGTTGAACTTCAagacatgcattttaaaatacaagttAAATATTCTAAAATTAAAGAGTATATCAGAGGGTGGACAATAAATAAgttctttaattctttttaatttaatttttcctTGTTTAAATGCCAATAGtggttaaaatgtaataaatcataaaaacatacagtacaatcCTGAGCAACAGTTACCTTGAAATAAGGACACATTTTTGAAATTACAATACTGTAAATTAATGTGTATTCTCAATATAAATACGAGTCGCATATAGTGGTTTACCCCTAATGATGATAAAGATATGGCAcccttttctttaaaattgGGTCCCTTTTTGTTTATTCAGCTTAACAGGATGAAGGCAGAGCCAGCAGGTAGAGTTGCCAGCagggtttcacatgttctcttcatgtctgtgttggtttcttccaggttctctggtttccttccacctcccaaaaacatgccagtaagtggacTGGGGACTGTaagttgcccctaggtgtgaatgagtgtgtgcccTGCAAAGGACTGGCATTCAAAGGACTCCCACTGTTCTTGGGATTGGTTCACTATGACCATGACctgaataaagtggttactaaagaaaaatgaatgaattaatgatttCAGGAACTCTTGGAAATGGCCCATTATGGACCACAGTGTCTGTCTCAGTGCCTTTTCTAATTTtgttaatgtaaatattgttaTGTCCCAGGGCTATATAATGAAGTGTTAGAAGTAATCAGATCAGGTGCAGACTGTACAAGTGCAATGCTTTTAGCTCCCTGAGTCGCAAGGAGTGTTAGAATGCTTCCACCAAACCCTTAAATCTATGCTCTGTGCCTTCTATGTAGAGACCAGGAAAGATTGGGTAGATGGCTTGCGTTTGCTCATGTTTGCTGTGAGAGAATCCCTGGGATTTAGTCCCGCAGAACTGGTGTTTGCACAGACAGTGCAAAGACCCTTGAAGATGTTAAAGGAACAGTTAATAGGTAAAAGTAACACATCTATTTGTGTTTTGGACTATGTCAGTTCGTATCGCGAGCGTCTTCACAAAGCCTGTGAACTTGCAAAAACTAATCTCGCCATGGCACAGTCTAAGATGAAAACAccaatcagctataacattaaaactacctgcTTGATATTGTGTAggcccccttgtgctgccaaacggctctgacccgtcaaggcatggactccacaagacctctgaaggtgcgCTGTGCTGTCTGGGACCCCGACGTAAGCAGCAGaccctttaagtcctgtaagttgtgaggtggggtctccatggattggacttgtttgtccagcacatcatGGATCAGATTGATCGAGAATTTGGaggtcaagtcaacaccttgaactctttggcatgttcctcaaaccattcctgaacaatttttgcagtgtggcagggcacattatcctgctgaaagaggccactgccattagggaataccgttgaaggggtgtacttggtctgcagcaatgttttgGTAGGTAGTACGtctcaaagtaacatccatatgaatgccaggacccaaggtttccccaGCAGAATGTTGCCCAGAGCAGcacactgcctctgcctgcATGCCTTCTtaccatagtgcatcctggtgccatctcttccccaggtaagcgatgcacacacacccagccgtccacatgatgtaaaagaaaacgtgattcagcagaccaggccaccttcttccatggCTCCATGGTCcaattctgatgctcacgtgcccattgtaggcgcttttggcggtggacagcAGTCAGCATGGGAGCTCTGACCGGTATGCgcctacgcagccccatacgcagcaagctgcgatgcactgtgtgttctgacacctttctatcatagccagcattaactttttcagcaatttgtgctacagtatctcttctgtgggatcggaacagacaggctagccttcactccccacgcacatcagtaTGCCTTGgacacccatgaccctgtctccgggtcaccggttgtccttccttgcaccacttttggtaggtactatccactgcatactgggaacaccccacacattcacattttttcctgcttccaacacatcaacttcaagaactgactgtttacttgctgcctaaCATATCccacccttgacaggtgccattgtaatgagaatcaatgttattcacttcacctctcagtaGTTTTAAtcttatggctgatcggtgtattttatatatgtgcTGAGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39860 lncRNA downstream 4825 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA downstream 4939 26625360 ~ 26625890 (-) False G33824
TU39858 lncRNA downstream 6604 26623999 ~ 26624225 (-) True G33823
TU39857 lncRNA downstream 7267 26623331 ~ 26623562 (-) True G33822
TU39856 lncRNA downstream 7611 26622999 ~ 26623218 (-) True G33821
TU39879 lncRNA upstream 6516 26645020 ~ 26650272 (-) True G33828
TU39881 lncRNA upstream 12168 26650672 ~ 26650936 (-) True G33830
TU40016 lncRNA upstream 137519 26776023 ~ 26820169 (-) True G33939
TU40233 lncRNA upstream 629795 27268299 ~ 27269120 (-) True G34132
TU40263 lncRNA upstream 666316 27304820 ~ 27307180 (-) True G34154
XM_026933141.2 mRNA downstream 149196 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA downstream 149196 26430072 ~ 26481633 (-) True iqca1
XM_026933546.2 mRNA downstream 212532 26414166 ~ 26418297 (-) True gbx2
XM_026933069.2 mRNA downstream 378581 26243940 ~ 26252248 (-) True ccdc80l1
XM_026933519.2 mRNA downstream 412251 26212753 ~ 26218578 (-) True si:ch73-193c12.2
XM_034313783.1 mRNA upstream 1993 26640497 ~ 26646721 (-) False si:ch73-23l24.1
XM_026933017.2 mRNA upstream 13577 26652081 ~ 26702789 (-) True nck2b
XM_026933530.2 mRNA upstream 67026 26705530 ~ 26708778 (-) True dph3
XM_026933316.2 mRNA upstream 121002 26759506 ~ 26765206 (-) True LOC113538336
XM_026933012.2 mRNA upstream 128386 26766890 ~ 26788038 (-) True mrps9
XR_003403851.2 other downstream 525373 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 722835 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2998816 23616157 ~ 23632013 (-) False uap1
XR_004580156.1 other downstream 5099401 21463861 ~ 21531428 (-) False raver2
TU39865 other upstream 1329 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 1329 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 1329 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 1329 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39869 other upstream 1329 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile