RNA id: XM_034310428.1


Basic Information

Item Value
RNA id XM_034310428.1
length 4130
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113547608
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15171801 ~ 15190025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCTTAAGAGTCTGATGGTCCTACAGCACGTACCTGCAGCCTCCTGCTGGCCCGCCATGCAGCGCACACTTGCACGCGAAATGCCACGCTGTCCCATCGGACTGTTATAATATGATGAGCTATTAAACTTGCCATGTGGCACACTATGATGCGTTTTTTTAACGATATATTAAATCTAACGCCTTAGGTTTACGGCGCGCAGAGAGCCACCTGTCCGGGAATGTAGCGGAGATCGTCCGCTCCTGGGCTCGCGAGCTTGTCTCTGCATTTAGAGGCTGCATGTGTGAAAGTTCAGCAGGTTCTGTGGCCATACATGGCAACCTCCTCCATAAGCTACAACATCTGCTGCTCATTATACCGTAGAACTCCCTTCCCCTTCCTTGTTGACTGCATGGTGCTCTGGCAACGAGATCCCATTATGATGTGGGCCAGTAGTCATGGTCCTGCCTAAGGGGCGACAGGACTTGTCAAAGTGCATGAGGTCAGCACCCAGACAAGATGGGGACAGAGAGTTACACTCAGCAGCTCCAGCTGGAGACCAGTGATGGGGCTGGAACGCTGGCGAGCATCACCAGTGTGGAGGGGCCAATGGGAGAAAGTGTCGATACAGGGTGGTACATGCCTTATCCAGTCGGTTTTCAGGTGTCACTTACCTGCTTTCTCTTACTGGAGCTGGTTCTGGGCTTTAGCAGTAACTTGACAGTGCTAGTGCTTTACTGCTCCCAGTCCAACCTGGTCGATTCTGTGAGTAACATGGTAACAGTCAACCTACACGTCCTGgacattgttgtgtgtgtgctttgtctGCCGTTAACAATTGTTGTGGTGCTGCTGCCAACGGGTCGCAACCTGGAACTTATCTGCTGCTTCCATGAAGCCTGTGTCACCTTTGCGAGCATCTCCACAGCCATTAATGTGCTAGTGATCAGTTTGGATCGCTATGACATCTCTGTGCGGCCTGCTAACCGGTTCCTCACTCCTCGATGGGCAGCGCTTCTGTTGGCTGCTGTATGGGCCGTGTCTCTTGCAGTTTTCTTCATCCCCTTCATAGAGGTGGACTTTTTCTCATCAGAGCCAGAGGATGGGTTGGCTAGCAGCTCCTTGGCACCGGCTTGGCGTAACAGGACACTACTGTGTGTGGGAGGAAAAGGTTATTACACAACCCTCGGAATGTACTACCACATCCTACTGCAGGTGCCCATTTTCTTTGTCACAGTAGTAGTTATGCTCTTCACCTACTCAAGAATTCTTCGAGCACTCAACATTCGTATTGGATCGCATATGAGGAGGAGTCAGCGTCGAAGTGGAGCAACCTGTAGAGGGCGCCAGAGGAGACggaaaaaaaaggggggctCAGCGGATATTGAAGGAGGAGCCCAAACAACAAACCAGACTAAGCAACTGACACATCCTCCACTCATCACCTCTCCAGTTCCAACCCCTACAGCCACCTCACCTCCACCTCTGTCCTCCACCCCGCTGGTTAGTGCCAGCACCGCGACTGCGCCTGCTCCAGCAGTAGGTGTTCAGGCTTCAGTTTCAGCTATCATTGCTCTTCGCAGAGCCGTAAGGCGGCACAGAGATCGGCGAGAGCGTCAGCGGCGGGTCTTCAGGATGTCCCTCATTATTATCTGCAGCTTCTTAGGCTGCTGGGCACCAATATCTGTGGCAAACATTCTCATCCTGACTCTAGGTCCCAGCGATGCTCTTGTTCGAGTGCGGCTTTGGTTCTTGGCCATGGCCTATGGCACCACCATATCTCATCCACTGCTGTATGCCTTCACAAGGCAGAAGCTCCGCCGGGCTCTCAGGGCCAAAGTAAAGAAGCGGGTGGTGTCCTTGCTGCAAGTGGACCCTTCCCCAGGCGGAACTGTCATTCACAATTCCTGGGTAGAGCCACGACAGGGACGTAAGATTCGTTTAGAAGGCAGTGATGCTACAGATCGGTGTCTAACAGAACCACTTTGAAATCAAGCAGCAAGACCTTTGGTTTGCATATTCGTCCAGTATGACAGCACATCAAGAAAAGATATTGTGTTGTGGCCTTATTAGGCAGAGTTTGAAGTGTGCTGTCCAAATTAATAAAGAGGTCATGATGAACACAATCAATGGACTCATAATAATCAGTGAgctaaaaaatgttttaacgTGTATTCTTTGCAAGTTGTGTGCTGATTTACAATGTTAACAATGTTCACTTATTTACCCTTTTACTCATATTTAGAGcattgtttttaatgtgaaaGTGATAACGATAAGCTGGGGTATTACTGAAAGATCTATTTTaaacttgttttaatttgtagtATACATTTTTGGTGCAAACACCAggacctatttatttatttgtttgtatgtttgtttgtttgtttttttatgtaatatatgtaatataatttatgttatttatttatgtaatatacaaaatgtaattGTGCAATATGAATTTTCTTTAGGCATAACTGTGCATATCATAAGATAATTTACAGAATTATATGATAGTCAGTAATAAGCTAATCTGCAATATTTGCAACTTGAAGTCAAATGGAGAATGGCACAGGTGTGCCAATTAAGCAGCTCATTTGTTTGTTAACTAGCATTCTTGTTAGAGATAAGACACAGAAGCCACCTCTGGGCCTCCTTAGCAACTGTTGTTTAGGAAATTTTACTATCACCAGCGAACCATGAGGAGAGCATGAGGAGAGGGCTGATGCAAAAGCTCAAGCGCTCAGTTATCTAGACTCGACCCTAGCCTTTTCTTATACACCTACACATTTGTTCACACTGAGTTAGATATGGACTTTAAATGCTCATAGCCTAGCAGAACAGTGTGGACTTAAGTCCATGTTTACATAATGGTAAACTTGCTCTTTGAGAGTACTCACCAAGGCACTAATCTTCAATAGCAGCTTACAGTATACTAAATGTACAATAACTATACTTTCTCATTTAGATGCATGTGAAAGCATTCTCTGATACAAGGGCAAATACATTCCGGACCATGCCTTATATCTCCTCACAAGAGTACTGTGGTTTTgaatgtgctttttattttccacatgGACATTCCACAGAGAATGAAAGTGTTCCTAAATACCACATTTCTCTATCACTAATTAGTTCTGCAAAGAAAATGACTGTTCTGCAAAGGAAAGTCTGACTCCTGCTTCGGAGATGATAAGTTCCtctgctgatttatttttggctgttaatgaaatactgaaaccTCAAAATGAAGATGTTCACCCTGGCTAATGCTGGGTTCATGTTAGTGTATCAGTCCAGTTTTAGTCAGTGTGCATTGCTGAGGGTTGGTGTACATGCTAGCAAGTAAAAACACAAGGGAGGTGcattagcttatttatttataactttattatGAATCAGTAAGTGTATAGTAGATGCTAATCACTGTACATACGTAAATGTTTATAGCCACAGTGTAGTATGTGGTAAGTCTATAAAGACAGTACCATGTTTACAGAGTCAatatcagaaaacacaaaactaggCATGTCCATAAGTGAGTCGAATATTAAACTCTACATGCAGAATACCTCACATGCCCTTTTAACATAAACTGTGTGGAAAATTGTGATCTTTCCAGTGGGCTCAGTGAATATCATCTATGGATAAAGTTCAATGAATCCAAACTTTGTATAGTTATGTTCTAAATGTTATACGTGGCCTATATATGATAATTATATATGATAATTGGTACAAAAGACTAGATTAGCGTTCTTTTAGCTTTCAATGAGAATATATTATGAAGATAAACTGAATGGGGCCTCATTTGTTCctgagcaaaataataaaatggctgAACAGCTCTGACACCATCGAAAAAAATTCCCATGAGGCCGCTGCAGACCTCCCCAGACTGATCACACATTAGCTGGTTTCTTTGGAGTCCATATGGAGATAAGAAGATCAGAGGGAggttttattttccattattaAGTGTCAGTGACACAAGCTCTACAGGATCACAGTATAATCTTGTCGGGTATTTATGAAGTTTCTTTTTCAACACATACACTGTTTGTGTTGAATCGGATGCACATCCTTTGACCATGCACTGCATGTTCTGTAATGTTGTAATTATTGTACAATAATGtcattgtgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32642 lncRNA upstream 68200 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 294950 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 325253 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 382752 14792411 ~ 14792622 (+) True G27450
TU32212 lncRNA upstream 570828 14562217 ~ 14604546 (+) True G27311
TU32702 lncRNA downstream 86615 15276640 ~ 15278716 (+) True G27733
TU32738 lncRNA downstream 281507 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 299511 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 424999 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 584351 15774376 ~ 15775849 (+) True G28040
XM_026924339.2 mRNA upstream 5238 15166061 ~ 15170136 (+) True cidec
XM_026919389.1 mRNA upstream 16057 15158934 ~ 15159317 (+) True LOC113529833
XM_026913770.2 mRNA upstream 25040 15144650 ~ 15150334 (+) True LOC113526373
XM_026911681.2 mRNA upstream 47115 15119491 ~ 15128259 (+) True rbm38
XM_026911506.2 mRNA upstream 59198 15109002 ~ 15116176 (+) False rae1
XM_026921306.2 mRNA downstream 32665 15222690 ~ 15230452 (+) True ip6k2a
XM_026926121.2 mRNA downstream 50309 15240334 ~ 15245898 (+) True sec61a1l
XM_026913120.2 mRNA downstream 59280 15249305 ~ 15255533 (+) False emc3
XM_026913112.2 mRNA downstream 59281 15249306 ~ 15255533 (+) True emc3
XM_026913091.2 mRNA downstream 65621 15255646 ~ 15274217 (+) True usp4
XR_004577012.1 other upstream 1674078 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1676009 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1559 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 88802 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 991293 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3584745 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3627377 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile