RNA id: XM_026911681.2


Basic Information

Item Value
RNA id XM_026911681.2
length 2472
RNA type mRNA
GC content 0.42
exon number 4
gene id rbm38
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15119491 ~ 15128259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCcggaagaaaggaaagaagtggTCGCTTGTCACAGTTGAGTGCATGCGGCGGTCGTGTACCAGGGAGCGCGTTCACTGCTGCTGCGATGTTTTGTATTGCATAGGAAGTTTAAGGACTAAAGAATTGAAAGCCTGGACAATCGAGCCTTGTTGTATAGAAAATCCCATATTTTGACTCTCtgactcttttttttgcatgccAGGATATTTTTAAACGACTGATTTGGGGGGAAACGTTGCTTTTACGCTTCCGTTACAGTTTGAGTATCCAATGCTTTTACATCCGTTTATGAACAGCACACTCGAAGCTATGCACCCAACGGGAATCCAGAAAGACACTACTTTCACGAAGATTTTCGTAGGGGGTTTACCCTACCACACAAACGATGCGTCTTTGAGAAAGTACTTCGAAGCGTATGGAGAGATAGACGAGGCTGTGGTCATAACGGACAGGCAGACGGGGAAGTCAAGAGGCTACGGCTTCGTGACAATGACTGACAGGTTAGCAGCAGAACGAGCATGCAAAGACCCAAATCCCATCATTGATGGTCGTAAGGCCAATGTCAACCTGGCCTACCTCGGAGCCAAGCCACGCAGTCTTCAAACAGGCATATCTGTTGGTGTGCAGCCAATTCATCCAGCACTTATCCAAAGGCAGTATGGgCTGGCGCAGCAGTATGTATACCCGCAAGCCTTTGTACAGCCCAGCCTGGTGCTCCCTTCTCAAGTGGCCTCCTCGCTCACTTCACCGTATGTGGACTACACTGCCTATGCCCAGTACACCTCAGCAGCATTTGAGCACTACCCTTATGCCTCTTCCCCGGGTTTCGTTGGCTATGGCTACACCAACAGCCACATCACTGGCCCATCCTCCAGCACCACTTCACTGCACCAGACCCTCACCAATGCGCCCACTGCCGCCACCCCTGCCTTCATCCAGTACCCACCACAGCAGCATCTACAACCTGAACGCATGCAGTGAGGGCCTGACGAGCCAAGTGAgcgctggggaaaaaaacatgaggaTAGAACTATTGCACTGTCACATCAGGATTTGCTTCGGGCAGCTGAGTCCGGCGACAGTGAAACTGTGCAGTGACTTTAAAAGAGCTTCCAGAAGCactgatgctttttaaaaaaaaattttcttcaacattattactgttattactattattcatGCTATTCATATCATAAGCTTAATTGtattaatgtttctttttgtgCTCACATTATATTGTTAAGATCAATCAGAGTAAGGTGCCTCATTGTATAGAGTGGGAAAACAAAGTTAAGGAAGACTGTACAGTCATACACTGAACATGAAGAGGCTTTAGAAGGTTTAATGGGGTATTGCTGCTCAAGGACACTGGAGAAAGCATTTGAGAGAATGGAAAGTCCAAATTTAAGGTTATAGATAGGGAAGAACACAAAATCAGAGGGGTGGGAAATGGAGATGCAACAAAACAGCCGTACATGTACAACAACATGAGATGTTGGTACTAAATCAAGGACAACATGGAGAACGTCAAGCTACTTCTACTGCTTAAAGATGCTCAACACCCCCCAGGACtacctttcttttttataatgAAGAGGCCTTAATACTAGAATCTTTCTTTAGGTGTAAATGACCATTttagcatttatatatatatatagggtgaACTGTGAATAAACCACCACCTGCTTCCAAACAAATAAACCCCAGTCTACAGACCTCAGGCTTGTTTAAGTCCAAAGACTTGCGATATGGTATTTTAGAGTAAGGGTGCTAATTAAAGATTTTGATCAGGTTTCTGTCCATGGTGATGATTGTGAATTTATGCCATAATGCAAAACTGATTTGGAGACAGTTGTCTAGTTCAGGAGAAGCATTGAATGTGCCCCTTGTTTGGATTGTGGATGAATGGAGATAATCATTATATGATGCAGTAAGCATTGGACATGTATGGACAATGCTTATTGTATCATATTTTTTGGACATATTTTAACATGTATGGTAGCTGACACTGATACCTACAGTACATCAGTTTTGTATAACTGTTAAAACTAATTGTAAACATCTTTCTGAATATCTCTGACAGGGGTGTTCTTTATGTACAGCATTGTCacaatttaaagcattttgcaGTATTTATGTTAAGATATTTAAGTGATCTGTGGTActattaggttttttttttttttatgtgtaaattgGTCTCTCAGTACACCAGACATGCAAAACATACAATGTTTCAGGCTTCTGGTTGCCAAATAAGAATGTGTACATAGTTGATTTAGCATTCTTCATATACTAATAATCCACATGTGCACCTAAAAATTTTAAGTTGATTTTTGAGCCTCAGCTTGCACCTGGCACATAATTGCTCTATGAAGCATTTTTATGTCACATCATTTCACTATCTGCAAAGAAGCCATACCAAGAAAAGTCTTGGGGAAAATAAAGACTTTATACTAAAAATA

Function

GO: NA

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32642 lncRNA upstream 12317 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 239067 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 269370 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 326869 14792411 ~ 14792622 (+) True G27450
TU32212 lncRNA upstream 514945 14562217 ~ 14604546 (+) True G27311
TU32702 lncRNA downstream 148381 15276640 ~ 15278716 (+) True G27733
TU32738 lncRNA downstream 343273 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 361277 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 486765 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 646117 15774376 ~ 15775849 (+) True G28040
XM_026911575.2 mRNA upstream 2404 15109002 ~ 15117087 (+) True rae1
XM_026911506.2 mRNA upstream 3315 15109002 ~ 15116176 (+) False rae1
XM_026911392.2 mRNA upstream 15189 15064895 ~ 15104302 (+) True LOC113524957
XM_026931131.2 mRNA upstream 56175 15052308 ~ 15063316 (+) True LOC113536922
XM_026929232.2 mRNA upstream 68694 15041619 ~ 15050797 (+) False thumpd3
XM_026913770.2 mRNA downstream 16391 15144650 ~ 15150334 (+) True LOC113526373
XM_026919389.1 mRNA downstream 30675 15158934 ~ 15159317 (+) True LOC113529833
XM_026924339.2 mRNA downstream 37802 15166061 ~ 15170136 (+) True cidec
XM_026909635.2 mRNA downstream 43542 15171801 ~ 15190025 (+) False LOC113547608
XM_026948053.2 mRNA downstream 43542 15171801 ~ 15190025 (+) False LOC113547608
XR_004577012.1 other upstream 1618195 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1620126 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 63325 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 150568 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1053059 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3646511 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3689143 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile