RNA id: XM_034311880.1


Basic Information

Item Value
RNA id XM_034311880.1
length 8440
RNA type mRNA
GC content 0.50
exon number 40
gene id plxnb1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13746014 ~ 13821483 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgcgtgtgtgagcgtGAGAGGAAGGTACACTGGATTATTGCAGACGTGGTGAAGTTGTGGGAACTCAAGGTCTCAAGGTTCTCAGCTTTGGATAGTTTTTGCTTGTACTTGAGAAGCCAGCTAAGACTGTTTTTTTGTATGATGTTTAATCAATCATCATTTGGATTTAATGGATCAGCAATATTTTTCTTCGCCACAGGGACATGTCTTAACAGGTGCCATGCTGTGGTTTTGTAATGAACCTTGTTTTGGTTTGTCTGTTACAAGAATACCGTTCCAGTGATAGTTCACTGACTTCTCTTGAAAGGTTCGGATTGCTGCTGCAGATATACATAGTTCCTGATCACAGGGCAGCCGAAAGAGAACTGCGTACAGCAGCGGCGAAAAGCAGGACGTCAGGAGTTTTGGAAACACCGGATGCCGAGGCTGCTCATCACTGTATCTCTCTCCACCCAATCCCGTAATATCGGAGGGAATTTCCAAGATTAATGTGTGGCAAAGTTGAGTCTAAACTCCAAATGGATGTTTCTTTGAGTGAATGAGAGTGCGTTTATCTTTTTgggtgtgcctgtgtgtgtgtgtgtgtgtgtgtgtcagaccaTACAGCTGACCTGTCTAGAGGGGACATGCCCCTTTaacagacaattaaaaaaacaaatgAGTTGTCGCCATGCTGCCCGGGATGGTGCGTGTGTTGCATGCTCTTCTCCCCGTCCTGGTGTTGTGTGAAGTCTCCCAGAGCTTCCCTTCATTGCGCCACTATCCAGTGTTCCTGCGCAACGACACGCAATTCGAGCATCTGGCTCTTCACCCTGAACCGGGACTGGGGCGCGTCTACGTGGGTGCTCGTGATCGCCTGTTCCGGCTATCCTCAGACCTGCAGCTGGAGGAGGAGGTTGAGACTGGGCCTGTGACGGACAGCCACGACTGCCTGCCTCCAATCAGTGACACCAGCTGCCCGCAGGCACGACCAACCAGCAACCACAATAAGCTGCTGCTTATTGACCCTTACAGCAAGGTGCTGATCAGCTGCGGCAGTGTGCACCAAGGCACATGTCAGAAGCGAGACCTGGATGCTGTGGGCACTGTGCTCTTTTCAGCCCAGAGGCCAGTGGACACACAGTATGTGGCGGCCAATGAACCTGAGGTTTCTACGGTGGGGCTGGTGGTGCGCCCACATAGAGAGCGACAACCAGTGCTATATGTGGGGCGTGGCTACACCAGCAGCCAGCCGCCCATCTCCACCCGCAATCTAGCCACCGAACCCATCTTCTCATACGAAGAAACAGCAAAGCTAACTGTGGTTGCACGGCTTTCAGAATACGACCACCACTTCGTGGCATCCTTTGCACACAATTCCCATGTCTACTTTCTGTTCTACCGCCGTGACTTGAAGTCAGAGGTGCGTGACTACCGCACGTATGTGTCTCGTGTGTGTCTGGATGATATGGCATACTATTCATATGTGGAAGTTCCACTAAGCTGCCGCTCGGCAGCGGGGAAGAACTACAACTTGCTACAGGCTGCTCGACTGGGACTCCCCAGGGCTGGAGAAACTAGAGGAGTAGACGAAGAGATCCTGCTGGGGGTTTTCTCCACGCGTTATGCCTCATCCAGCAAGCCCAGCAACGAGTCAGccctgtgcatgttctccctgcaGGAACTGGATAAACGCATCAACGACACTCGAGATCTCTGTTACACAAAAGTGGGCCGCCAAGAAGGACAGGAGGCTGCCTATATAGAGTACGAGGTGAAATCAAACTGCGCCAGTTTGCCACCAacCACTCTAGAAGCTTACCCATGTGGTTCTGACCACACTCCAAGCCCAATGGCCAGCCGTGTGGCGGTGGAGGCCGAGCCGATACTGGACAGCCCTTCTGCTCGTCTTACTGCGGTTGCTATTAGCGTAAAAGCAGATCACACCATTGCTTTTTTGGGAGACTCTAAGGGAAATTTACACAAGGTGTTTTTGGGTCCTCGTGGTGAGGTGGAAGAATATGCCATTATTCCCATTCAGTCAAACACAGCAATCAGTAGTGAGCTGACTCTCGACCAATCAGAGGAGCACCTGTACATCATGACCAGCACTATGCTGCAGAAAAGGCCTGTCGCAGAGTGTCACCTGCACCTGGACTGTCAGTCATGTCTCTCAGCTCGAGACCCATACTGCGGCTGGTGTGTGCTGGAGGGGAGGTGTGGTCGGCGTGGCGAGTGTGCACGTGGGGAGCAGGCTGATCAGTGGCTGTGGAGTTTTGATATGGAGCCACAGTGTCTGACTGTACAAACCAtcacaccatcaaacatcagtaGAGAGGAGAGCAGGACAATCACCCTGTCTATTCCTGGTCTCCCGAGGCTCGAGGATGGGAAATCATATTCCTGTTTCTTCCAAGACATTCCCTCTCCTGCCACCATCACTGAGAGCGGGGTCACCTGCCCCTCACCAGACCCCCACAGAGTCCCCTCTGTGTCACCCGGCCAAGaTTTTCTAACAGTCACACTATCCTTACggtttggtgatgtcattgtGACCTCTCGGGAATTCAACTTCTATGATTGCAGAGTTGTCAAACAGCTCTCAGGGAGTATGCCTTGTCATGGATGTGTGTCCAGCCGTTGGGGCTGTAACTGGTGTGTACGTGAGCATGTGTGTACCCACAAATCACAGTGTGAGCAAGGGGTCATCATTTACAACGAAAATTTCAAAGTTCCCACACCCTCCCCTCCTCCAAGTACACCTGTCAAGATTACAACAGTCTCCCTGAAACATGCACTCCATACCACCACACCACCTACTAAGCCTCCAACCACAACCACTGTACCTACTACAACCACTACAGCTACCACTCCAACCACTCAAgctacaactacaactacacCAGTGGCAACTACAACAATTGCACCAGCCACCACCTCCACTCCGACTACATTGTCCACAGTTCCTGAACCCACCATTGCTCCCACCATCCCCATGTTGCCAACCCCCCCATCCCAAATCACGACCACAACTCCCTCAGCCTCCACGCTGCCTGTTCTGAAGGAGCGTACCTCAGAGGAGATTCTGCTAGCCtctgagacagagggagaagcCCTTAGCGAAGCCAAGAGTGTTGTGATCACCATCTCCAGTCTGGACACTGGCATGAAAACAGAGCCACCACTCATCAACTCAGCAGCCAAGGACCAGCAGTTGCCGTCAGTGTCACCGTCACAAGGTGGGGTGTTGCTGTTTCCTGAAGAAGTCACGCCACTGGTGGAACCAGTAACCAATGCTCCAGAATTACCTAGCAGTCCACAGATTGTAGAAGAATTGCCTCCACTGGCTGAGCCTCCTACTGAAACTCTAAACATAACACAATCAGAGAGCCTCGAGACTGTGGTAGCAGATTCTAAACCAGACGTCTTGTACTTATTGCCTACAGTACCTGCTGTCCTACCATCTGATTTGCCTGTTCACTCAGAGAACGAAGCAGATGAAACTGAAACGGAGGTGCTTCACCTTCCCCTAGAGGAAATGGGCATGGCTGAAAATGACACAACTGCATTTTCAGCCGCAACGGTGCTGTCAGGTGATGGAGAATTAGACCACGCCTCCCCTGGCTACCCTCATCTCTTGGATGTGGATTCTGAGACAGACTACCACTATGACATGGCAGACCTACCGcagggAGACGAGGGATTGTTTGAGAATTGGGGTTCGTCTGCGTGTCCTTGTGTTGAGAAGGTTCAGGGCTCACCACTGCTGCCTGTACAGACAGTGAGGAAGATCAATCTGTTGGCCCGCAACCTTCACCTCTATGAggacCAAGACTTAGAGTACGAGTGTGTCTTGGTGATTGAGGGACGGACTGTGGTGGTGGTCGCCTATGTAGAGCAAGATGACATGAACCCCTCTCTCTTTGACATTACCTGTCAGCATcaccagTATTCCTACTCAGCTCTGGTGGAGGAGTACAACGCCATGGTGTACGTGAAGAGGAGAGACACTTTTCATGTGGACAGCGCTAATGACCTCTTTGTAACTTTGTACAACTGTTCAGTGGGCCGTTCAGACTGCAGTCGTTGTCACACAGCAGATCAGAAGTACGATTGTGTGTGGTGCGGTGAGGTTCATTCAAGCTGTGTGCACAAAGAGGCCTGCTCAACGGGTGTCAAAGACAAATGTCCTGCTCCTGTCATTCATTTTATCGAACCGCTGACAGGGCTGAGAGAGGGAGGCACCACTCTCACCATCAGTGGCTCCAACTTGGGCCAGAAAGCTCATGACATCTTACAGTCAGTCACTGTGGCTGGCATTTCCTGTACAGTCATACCAGAACTGTATGAGATATCATCCAGAATTGTGTGTACAACAGGAGAGAGCAGAGAGGAGAAGTCAGGTCACGTCTCAGTAGCAGTATCTGGTGCAGGGCACAAAGGTCTCTCCATTCAGACTTTCAGCTACCAGGAACCAGTGCTGGAAATGGTGAGTCCCCAGAGAGGACCCCGTGCAGGAGGAACCTCTCTCACCATCAAAGGCAAAAAGTTACTGACCGGCAGATCCAGTGACATCAGCGTGCTGCTGGGCGATGTCCCCTGTCTCATtgTGTCAGATGTTCAGGAAGGCAGGATCGAGTGTGTCACTGGAGCCAGCAACCAGACTGGAGGGCACAGAGTAACAGTGCGCTATGGCAACCGTGAGCGCTATCTCAATGGCATCCACTTTCTCTACACCCCAGATCCTAATATAACAcaagccacacccacaaaaagCTTCATCAGtggTGGTCGTGTGATCAGCGTGTCTGGCCACAACTTGGACGTAGTCCAGGAGCCACGGATCCGAGTGACCATGACCAGGAAAAGAGGTAGCAGgcggagaagaaggagaaacagAGGAAGTGTTACAGCTGTGGGTGTTGAGCATGGTTTACTGTGGAGACACAAGAGAATAATTCCTGAAGTAGATGGTCCAGAAAACACTGGCAAATATtttgaaGAACGGTGTGAGGTGAACACTTCCTCTCTACTGCTGTGTCGTAGCCCTGGTGTGAGCTCTGAGATGTTAGAAGCTGACGTGCAGGTGGAGTTTCTTCTGGATAACTTGCGCTTCGACTTTAACGCAATCACCCAATCGTCTTTTACCTATGAGCCTAACCCCATCCTCTACGATCTCAACCGCCATAATCCCAATGAGCCCTACCGCTACAAACCTGGTTCAGTCATATTGGTAGAGgGGCAGAATCTAGACCTAGCTATCTTTAAAGAGGAGGTGGTAGCTCTCATTGGTGAGGGCATATGTACGGTTAAAACTCTGACTAGGAACCACCTGTACTGTGAGCCACCGGCCCAGCAGCCCTCCCCCTCCCACAGCCACGGACGCAAGAGAGAAGGAGCTGATGCACTCCCAGAGTTCACAGTGCAGATGGGGAATCTGAACTTTTCTCTGGGCAGGGTGCAGTATGACACCCTCAGTCAGTCCACCTTTCCTTTGGAAGCTCAGATAGGGGTTGGAGCAGTGGCTTCTCTCGTCGTCCTTATCGTTGTGATCATTGTTCTCATATACAGGAGAAAGAGTAAACAGGCTCTGAGGGATTACAAGAAAGTTCAAATTCAGCTTGAGAATCTAGAGACGAGTGTGAGAGACCGCTGCAAGAAAGAGTTTACAGATTTGATGACTGAAATGATGGACATGTCAAGTGATCTTGTGGTATCTGGGATTCCGTTTCTGGATTACAAGATGTACGCTGAGCGCATCTTTTTCCCGGGTCATCGGGAGTCGCCACTGCGCAGGGACCTGGATGTGCAGGATTGCAGACGGGCCACAGTGGAGCAGGGACTTGTCCAACTTTCCAACCTCCTCAACAGCAAACTCTTCCTCACCAAGTTTATCCACACTCTGGAGAGCCAGAGGACATTCTCTCCCAGAGACCGAGCCTACGTGGCCTCTCTGCTCACTGTAGCCCTACATGGCAAGCTGGAGTACTTCACTGACATTCTGAAAACATTGCTCAATGACCTGGTGGAGCAGTACGTCGCCAAGAACCCCAAACTCATGCTCCGAAGAACTGAGACTGTTGTGGAGAAGCTCCTGACCAACTGGATGTCTATATGTCTTTATTCTTTCCTGAGGGACTCGGCGGGGGAGTGTTTGTATATGCTTTTTAGAGCCATAAAGCACCAGGTGGATAAAGGGCCTGTGGACGCAGTGACTGGCAAAGCCAAGTACACCCTCAATGACAGCCGACTACTCCGAGAGGACCTGGAGTATCACACCCTGACTCTGAACGTGCTGATGCAGGGAGTAGGAATGAATGAGACTCAGCCAGTAGCAGCTAAAGTACTAGATTGTGACACTATAACCCAAGTCAAAGAGAAGATTCTAGACCAGGTCTATAAGGGAACCTCATACTCCCATAGACCGCACACAGATTCACTGGACTTGGAATGGCGTTCAGGTGTCGCAGGTCACCTCATTCTCTCAGATGAAGATCTAACATCTGTGGTGCAGGGCAACTGGAAACGCCTCAATACACTTCAGCATTACAAGGTTCCTGATGGAGCTACAGTCGCTCTGGTGCCACGACATAGCAAACACGTCCACCATGACAACCATGACTATGTGGCAGGCGAGAAGACGCCCATGCTGGAGGATGCAGATGAGGGTGGAGTCAGACTGTGGCATCTTGTAAAGGCCAGTGAGGAGCCTGAACTGCCCAAACACAGACGAGgcagtctgagagagagagagaggcccaAGGCCATACCGGAGATCTACCTCACACGACTGCTCTCCATGAAGGGCACTCTGCAGAAGTTTGTTGATGATCTTTTCACCGTGATTCTGAGCACAAGTCGGCCCGTTCCTCTTGCTGTGAAATACTTCTTTGACCTGCTGGATGATCAGGCAACTCACCATGGCATCTCGGACCCAGAAACAATCCATATTTGGAAAACCAACAGTCTTCCTCTGCGCTTCTGGATCAACATTGTGAAGAACCCTCAGTTTATCTTTGACGTGCAGGCATCCGACAACGTGGACGCTGTCCTGTCTGTCATCGCTCAGACCTTCATGGATTCCTGCACCATTGCTGAGCACAAACTGGGCAGGgacTCCCCCATCAACAAGCTGCTATATGCCAGAGACATTCCTCGTTATAAGCAGATGGTGGAGAAGTACTATGCTGACATCAGACAAACCATCCCAGCTAGTGATCAGGAGATGAACTCTGCCTTAGCTGAGCACTCCAGGAATTACTCAGGAGAGCTGAATTACCTAGTGGCCCTGCATGAGCTGTACaaatatatcaataaatattatgACCAGATCATCACTGCCTTAGAAGAGGACACCACAGCTCAGAAGATGCAGCTTGGTTATCGTCTTCAGCAGATCGCAGCCGCGGTGGAAAACAAAGTGACAGACTTGTAATTAAGAGATCACGATGAGATGATTGATAGGAGGGGAAAGAAATAAGGAGAAGGTGAAAGATATGGGTTGCACTGAAGAATGGACCTACTGTATGTAGTGACTGCAGAGAGTTGTGTAGAAGCAGCAAATGAGAACCACAGCACTGTGGGTGTTGACTTAAACGACGGAGTAAACACACTGCCACTTTACATAGGAAAAGAGGactcagtgtgtgattacatgGTTTCTGTCATTATTTGAGAGATTAGTGAATTGGAGACTCTTCGGCATCCTCAGAATGACGGAACAGGTTCAGGAGGGAGTTCTCTTGTGGTCCTTCAGGAGAAAACGGAGGACATGTACCAGTGTGGTGGAATGTGATTGAAGTCTCTGCGAGAGGAAAAGCCATGTTGTCCGTCTCCTCCACTACTCGATCAGGTGACTACTGCAATTTTCCCAACACAAAGAGAGCGATTGTGGTCTCACCAGTTCCAACCACATACGCCATTCAAAATCAGTACTGACTGACAATGGGCTCAAGTTAATGCAGTTTTGTTCCACATAGACAGACATTTACTGAGGAGGAATATGATACCTGTCAAAGTAGAGAAAAGGCTTTCAAAAGCATGAAAATGACTTGTACAGGTCAAAAACAAAATCTGTGCCTCACAGAACTTTTGCTTCTTCCTGCCGTTCTCTACCTCCTcatatgtttctttttctgattCACTCTACATcattctttctgtgtgttttgccaATATGCAGAGCATACCCATCTGTCCAGcagttactgtgtgtgtactAATATAATGAAGTGATGGGCTTTGTCTgttgtcattttatttctcctgctTATTGTCACTGGCagggagtgaaagagagaacgTTCATGGTGTAAAACATCAATGCAGAATCTTGTcattttagattattatttatttaatattagaaCATGTAACATGCATCTTTCATTTCTTCCGCAACTGTCTGTATCATCCGTCCAAGTCATTAAAAGGAGCTCTgacactgaaagaaaaa

Function

GO:

id name namespace
GO:0048675 axon extension biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31688 lncRNA upstream 126625 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 238688 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 258362 13490161 ~ 13497729 (+) False tshba
XR_003403408.2 lncRNA upstream 382281 13351846 ~ 13373810 (+) True LOC113533310
TU31730 lncRNA downstream 901 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 12756 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 51832 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 179448 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 348297 14169780 ~ 14172077 (+) True G27164
XM_034310990.1 mRNA upstream 51763 13695082 ~ 13704328 (+) True prkag1
XM_034310993.1 mRNA upstream 51763 13695083 ~ 13704328 (+) False prkag1
XM_034310999.1 mRNA upstream 51763 13695122 ~ 13704328 (+) False prkag1
XM_026925313.2 mRNA upstream 61543 13686081 ~ 13694548 (+) True pa2g4a
XM_026915311.2 mRNA upstream 70554 13661845 ~ 13685537 (+) False erbb3a
XM_026924315.2 mRNA downstream 5940 13827423 ~ 13834026 (+) True si:dkey-19e4.5
XM_034311769.1 mRNA downstream 15064 13836547 ~ 13864669 (+) False setd5
XM_034311755.1 mRNA downstream 15064 13836547 ~ 13864669 (+) False setd5
XM_034311750.1 mRNA downstream 15065 13836548 ~ 13864669 (+) True setd5
XM_034311762.1 mRNA downstream 15065 13836548 ~ 13864669 (+) False setd5
XR_004577012.1 other upstream 254795 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 256726 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1370101 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1457344 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2359835 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4953287 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4995919 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile