RNA id: XM_034312208.1


Basic Information

Item Value
RNA id XM_034312208.1
length 4281
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC113526407
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11695631 ~ 11753218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCTGACCGTGCCGGAGACATGAAACGAGCTAAGCTAAattaagctaagctaagctaagctagctagaGGATAGCGGATAGCGGCTCTAACAGCATTAACGAGCCGCTGTGTGGACTAGCGTGTTTAGCTAACGGGGTTGAGACAGCGACAGGCGGCCAGTGAGAGTCCCACAGTGCAGGAGCTGGTGTGCAGGAGCTGCATTTAGACACTGCAGGCTGTTATTCAGtgaccagacacacacatgcacagaagtGCTGAAGGCTTTTAGCTCACTGCATGCAACAACTGCACACCGGCATTTTATCACTAAGATTTCTCGTACGCTAAGTTAATGGTTCAGTGTTAGAGCGCTAACGCTAGCAAAACTAGACGGACAAATCAGATAGAGCTTAGCTAACATTTTAATCAACCGGTGTCGAAGCTCAGTAGATAACGGTGGAGTTTGGATGCTTTGAATGCACAAGTAAAGCCACGCAGGAGGGGtttatgtgactgtgtgtgggGAACTGCAAGATGCAGGAGCACTGAGGACGCACACTCTCGCCATGGCGTGTCCCCCATCCCCTTCCCCTGTTTAAGAGCACCATCTGTCCAACATCTTGTCTCTGGGGCTTCAGAGTGGAGCcccacacaccaacacactacaGTTTCAGtcttttgtgtttgtgtgtgcagaagGTGTGTGAGTTGGGTTATAGCCTCTTTGCTGAAGGAAGATGTCTGTGATATTGCCCCTGGATGGGGTAAGAGAGGGGGACAGCGTGCTGGTTACTGAAACTCCTGCTGCCAGCCGCTGTAAAGGAACCTCTACCACACTGAGCAAAGACAACAACACTGAGAACAATGGTGCAGAGCCTGACGACAACCTCACACAAGACACACAGAAACGCTGTCAAAACCATGGCCATAGCAGGAAAAGAGCCAAGTCCAATGCCAAGCTAAAGCTGGTGAGGAGTCTAGCGGTGTGCGAGGAGTCATCAGGCATGTTTTCTACTGATGGACCTGCAGAGAGCCAGGATATTATTCAGCTCCACATCAGCTGTCCGTCAgacaaagaggaagagaagtCTTCTAAAGATGAGTATGAGAGCgaggagagggagaagaaggacaaaactccacacaagATGCTCTCACGTGACTCCAGTCAGGAGTACACAGACTCCACAGGCATCGACGTGCATGAATTCTTGGTgaacacactgaaaaacaaccccagGGACAGAATGATGCTGCTGAAGCTGGAACAAGATATACTGGAGTTTATTAATGATgataacaaTCAGTATAAGAAGTTCCCCCAGATGACCTCATACCATCGCATGCTGCTACATCGAGTAGCAGCTTACTTTGGCATGGACCACAATGTGGACCAAACGGGCAAAGCGGTCATCATCAATAAGACGTGCAACACCCGCATccCTGAGCAAAGGTTTTCTGAGCACATTAAAGATGACAGAACAATGGATTTCCAGAAGAAGTTTATACTGAAGAGGGATGATGCAAGCATGGACAAAGATGACAACCAGATTCGGGTCCCTCTGCAGGACGGCCGCCGTAGTAAGTCCAtcgaggagagagaggaggaataTCAACGCGTCCGTGATCGAATCTTTGCTCGGGAAgtgtttttttcttcacagtctTCTCAAAACGGATACCTCAACGACAACAGGGGGAATAAAGAGTGTTCGAGCCGGCCATCGAGCAGTCGTCAGAGCAGCACTGACAGCGATATGAAGAGTCTGGAGCCACGGCCTTGGAGCAGCACGGACTCGGACAGCTCAAATCGCACACTCCGGCCTCCCGTTACcaaggccagcagcttcagcgGCATCTCAATCCTCACACGCGGAGATAGTCTGGGTAGCAAAGGCTCACAGGGCAGTGCCAGGGGCTCAcgcacagGTCTTCCTCTTGTAACCACAGAGGCTTGCCCCCAGCCACCTCAGCAAAGCCGCACTCTCCTGCCCTGCCCATCCAGCTGCCCTTCCAATGTTCCTCAGAGCCAGgctccaccaccacctccacaaACGGCTCTGCTGCCCACCCctactcacactcacacgcactctCACCCACAGCACCCCATCGGCAGCCACAGCCATAATCACATGCTGCCGCAGCCGGTGGCATCTCTGCAGCCTGCTCCACAGCCTGTATCATACTCCAGTACCTCCTGCCCTCAGGTCATCCTGCCTGTTTCTCCTTCTCAGCAGTATAACTTGgcCGATGAGTTGACTCCAGGTTTTGGACAGATGTCTTTGAGCCGTCAGGGCTCCAGTGAGGCTCCAGAGCCACCAGGACTCTATCCACCTCCACCTGCTGTGTTATCCCAGCATCCTCCACCACAGCCAGGCTACATTATTGCCCCACCTCCATCCAGCTACCAGCCGCCCACAGCCCATCCACACCCCCCTCCACCAGCTCCACCACCCACTCAGCCCGTATTGCAGACGGCTCCGCCCGCACAGGGCTACATGCAGCCCCCTCCTCCACCTCAGCAGATCCAGGTGCAGTATTATTCTGCTGGTGGACAGTATCCAAGTTCAGGACAACAGTACAGGTCCATGTCTCACCAGGTGTCATACCCTGCGCAGCGCTCTCAGCCCATGCCCCCGCCAGCACAGCCCTCTGCTCCTCTCCAGCCCATCATGCCCAGTCAGCAGCCAGCATACCAGGGAATGATGGGAGTTCAGCAGCCGCAGAGTGCCAGTATCATGAATTCTCAACGTCCAGGCATGAGTGGACAGATACAAGGCATGGTGGTACAGTACACACCTATGCCGTCCTATCAGGTGCCCGTAGCTAATGAAACCCAGCCTGTGGTGCAGCAGCAGTACCAGCAACCTGTCATGGTACCCGTTAGCCAGTCTGTACAGGGTGCAATGCCAGCCGCCCCGCCCATGCCAGTCTACTACAGCGTCCTGACACCAACACAACAGAACAGCACAAGTCCGTCTGTGGGCTACCTGCAGCCTCCCAGTTCAGATCAGTACCAGATGACTCAGTCCCCTTCCCCCTGCAGTCCTCAGCAGATACAGCAGCAGTATTCAGgagtgCCACCTCCTGGTCCAAGTGTTATGGTGATGCAGTTGAGTGTTCCGAATGGACCACAGCCTACCCAGAATCCTCCCATGGTGCAGTGGAATCCCTGCAAGTATTACAGTGTGGAGCAGAGACCCAGCAAACCTGAGCCGCAGgtcaGCACTCAGTTGAGTAGTCCGCTGGCATCTCCTACTCAGTCACCCACTCCCACTCCATCAAGCAGCGGAAACAATGTGTGTCCTGGGCTCGGCCCACTGCCTCTCATTTCCCAGTTTCCACGGCCTGGTGGACCCACACAAGGAGATGGGCGCTATTCGTTACTGGGACAGCCTCTGCAGTACAGCTTGTGTCCTCCAACCATCATGCACAACCATACCCAATCTTCCTACAGCTCCCACCAGAGCTCAGGAGTGATAAAGCATGGAGCCCgaggaaagaaacagacactgaAATCTGCCTCTACAGATCTAGGCACTACTGACGTGGTGGTGAGTCGTGTGCTGGAGGTTACAGACTTGCCTGAGGGCATCTCTCGCCCAGAGGCCGAGAAGCTCTTCAACCAGCTCTCGATGTGCGGGGCCAAGATCCAGTGGCTGAAGGAGCCGCAGGCATCCCGGGGAACTGGCACTACTCCAGCGCATGGAGCTGGAGGGGGCGGGGCAGTAGGAAAGGGCGACACCCATGACCCAGCACACCTCTACACTGTGGTGGCAGTGTTCCCCAACACCATGGCTGCACAGAGCGCTTCCTTTAAGCTCAACAACAGCGGAGGGAGTCTGTTCAAACTGCGCGCTGCCAAAAAGAACTATGACCTGCGCGTACTAGAGAGAGCTAGTTCACagtgaggaaagagagagagagggagaggagtgGGGTGGAAGAatggagagaagaaagagatcATACTgattttctcagtcttttttttgtatcattacGTAAAGAAGACATAACACATGTAAGCATGTGTACCTCTGTTGTACCTCTGTATATATAATTCCTTATgtacacacagacgcacacacttacacacacagccatgcaCTGGACAGAGGGTGTTGGACAGGCTCCTCCccatctttttctgtctctcttttcattctgtctctccttcAGTCATCAtatgccttctctctctctctctctcttgctctctctggcTAATATTTCCTCTATCACATTCTTTTTCTGATgctcctctcgctctctctgtctgtctctctttctgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579590.1 lncRNA upstream 7407 11668819 ~ 11688224 (+) True LOC117599151
TU30080 lncRNA upstream 32537 11662230 ~ 11663094 (+) True G25434
TU30064 lncRNA upstream 72562 11619169 ~ 11623069 (+) True G25422
TU30052 lncRNA upstream 109988 11585407 ~ 11585643 (+) True G25410
TU30050 lncRNA upstream 115601 11579738 ~ 11580030 (+) True G25408
XR_003403548.2 lncRNA downstream 50372 11803590 ~ 11805459 (+) True LOC113534932
TU30282 lncRNA downstream 192875 11946093 ~ 12038014 (+) True G25624
XR_003403381.2 lncRNA downstream 204010 11957228 ~ 11974989 (+) False LOC113533008
XR_003403384.2 lncRNA downstream 204035 11957253 ~ 11974989 (+) True LOC113533008
TU30578 lncRNA downstream 521634 12274852 ~ 12275052 (+) True G25872
XM_026922402.2 mRNA upstream 116500 11536329 ~ 11579131 (+) False arhgap9
XM_026922392.2 mRNA upstream 116500 11538020 ~ 11579131 (+) True arhgap9
XM_026925428.2 mRNA upstream 174721 11517494 ~ 11520910 (+) True ddit3
XM_026919915.2 mRNA upstream 195115 11486737 ~ 11500516 (+) False dctn2
XM_026927166.2 mRNA downstream 1345 11754563 ~ 11760603 (+) True LOC113534407
XM_026947319.2 mRNA downstream 79489 11832707 ~ 11892740 (+) True LOC113547077
XM_026947391.2 mRNA downstream 79489 11832707 ~ 11892740 (+) False LOC113547077
XM_026923995.2 mRNA downstream 149000 11902218 ~ 11937563 (+) True shmt2
XM_026927376.2 mRNA downstream 267028 12020246 ~ 12026634 (+) True h6pd
TU29627 other upstream 787059 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 941009 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1497176 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1788460 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 2098777 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 451311 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 772952 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1512809 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1742638 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1742639 13495857 ~ 13499365 (+) False tshba

Expression Profile