RNA id: XM_026913686.2


Basic Information

Item Value
RNA id XM_026913686.2
length 4237
RNA type mRNA
GC content 0.45
exon number 22
gene id rbl1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5717530 ~ 5756688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTCTATTGGCTACAAGCGAACCGATTTCGCGCCGTTCGGAATCACCGGAAGTGAGGGACAGCAGCTGCAGGACGACGGGATTGTACTCTTATTTTTCCGcgaataaacattttaaaggcTTCACGACACTTTGAACCGCTTCAAAATGCGGGGGGATGAAACTGATTCCGACTCTGATTCGATTCAGAGAAGCCTTGAAGCGCTTTGTCAAGAATTAAACATGGACGAGGAGACGGCGACGGAGGCGATGCAAAACTTTACTTCTATCTGGAACACATACACTCTGGAGGGTGAGGTGGTGCACTGGTTGGCCTGCTCTCTGTATGCAGCTTGTAGAAAAACTTCCACTCCCACTATAGGTAGTGGCATGGTGGAAGGCAATTGTGTCTCTCTCACCAGAATACTACGTTCCTCCAAACTCAGCCTGATCCAATTCTTCAGCAAGATGAAGAAATGGGCAGATATGTCAAATCTCTCGCAGGATTTCCGTAACCGCATAAGCTGTCTCGAGAGGAATTTTGAAGTGTCGACTGTAATCTTTCGGAAATTTGAGCCAATATTTTTGGACTTGTTCCAGAATCATCAAGGTGAACCTCCACGGCAGCCAAGAGGCAGGAAGCATAGGCGACTTCTCTGCCACACCAGTGATGTTTTCAAGTTCTGTTGGACGCTGTTTGTGTACACCAAAGGCAATTTCTGTATGATTGGAGATGATCTGGTCAACTCGTATCATCTCCTTTTGTGCTGTCTGGACCTGGTCTATGGTAATGCTCTACTCTGTGCCAACAAGAAAGACCTCATCAATCCACATTTCAAAGGCTTGCCAACAGATTGTGGGGGCTCAGAAGAGGCTCAGTGCGTGCTTGAGCATTTGTGCGAACTGCACGATGGTCTAGTTGTTGAGGCTAAAGGGATAAAAGAGCACTACTTTAAACCTTACATCAGAAGTCTGTTTGAGAAAAAAATTCTTAAAGGCGACAAGGACACGCTTACTGAGTTGCTGGACACTCCAAACTTCCAAGACAATAACAAAGCCATAAATCGTGAATATGAAGAATATGTCCTGACGGTGGGTGACTTTGATGAGCGAGTGTTTTTGGGTGCTGATGCGAATGAGGAGATTGGCACACCACACAAAATTACCCCTAAGCCGCCATCCAGTCAGTTATCAGCCCGAATGCAGGTGGAGAACAACCTTCAGCAGCACTTTGAGAAGATGCGTTCGCTGGCCCCTTCAACTCCACTTACAGGGCGTAGGTACCTGAAGGAGAAGGAGGTACTGATCACACCAGTCTCTTCAGCTACTCAAAGTGTGAGTCGCCTGCAGAGCATGGTGTCCGGCCTCTGCAATGCCCCTACTGATGCCCTGCTCCAGATCTTCAAGTCTTGTTCTCGTGACCCCACTGAAGCCATTTTAAATCGTGTGAAGAAGCTAGGAGAGACTTTCAAACAGGCCTACACCAAACAAACAGATGATCTTCCGGGAGCACATATTGACTTTGCAGAAAACCGTCTGAAGATAGctgaaatactgtattttaagaTTCTGGAGAATGTTATGGCTCAAGAGATTAAGAGACTCCAGGGTAAAGATATGACTgTGCTGTTAGAACAGGATGTGTTCCACTGTTCTCTTTTGGCCTGCTCTCTAGAAGTTGTGCTGTTTGCTTACAGTTCTCAACGAACGTTCCCTTGGATTTTGGAAACTTTCCAGCTTAGACCATTCTATTTTTACAAGGTGATAGAGGTGTTCATCCGCTCTGAGGAGGGCCTATCTAGAGACATGGTGAAGCACTTGAATGTCATAGAGGAGCAGGTACTGGAAAGCAGGGCTTGGACCAAAGACTCAGTACTGTGGGAGGCATTAGAGAATGCTAATTCTGAAGTCCCTACTGTAGCAGAGGTAAATTTTCCTAGTAGTCTTGATTCAGGCCACAACAGCAGTAGTGGGGGCCCTACCCACCTTCCTCTGGTGGCTCTGTCACCTATAATGCACCCTCGTCTCCGAGAGGTCCGCACTGGCCTGGGCTCCAGTGCTCGTAAAGatgCTCCTCCAtctcccatctctctccatGACCGCTTCAGTTCTCCAGCGGCAGGCAGTGCCAAAAGGCGTTTGTTTGGTGATGATCCTCAACCTCAGTCTCCAGTGAAGCGAATATCTGTCACCCCCGTGAAAATCATACCCAACACTTCTACAGAAAACAACAACCAGAACATGACCACAGCAACTGTCCTCTCCATGGCTACTTCTAACGGCCAGCAGCTCAACATCCCtttgccagTGATGAAGAATGACATGGGAAGCATCACGGTAATCCAGGTACAAGCGAACCAGCTGAACCCCCTCACCGCCCAGGTGCTGCTCACCTCCCCAAACAAAGCCCCTGAGGTACATACACAACCAACCAACAGACCACGCCGCACAGGATCCCTTGCACTCTTTTTCCGCAAGgtGTATCATTTAGCAAGTGTGCGTCTCAGAGATCTATGTCTAAAGCTGGACATCTCTGCAGAATTAAGGGGCAAAATCTGGACATGCTTTGAGCAGTCTTTGGTCCACTGTACAGACATGATGAAGGATAGACATCTGGATCAGCTCTTGCTCTGTGCGGTCTACATCATATGCAAGATCTCAAAAGAGGAGCACACTTTTCAAGACATAATGAAATGTTATCGGACTCAGCCTCAAGCAAGCAGCCATATATACCGCAGTGTGCTGCTGAGGAAAAGAGTCAACGAACAGCAGGCTGATGACAAAATGGAGGTTGATCCACCAACAGATCAAACCAACGGCAGGACAGATCAGGGTGCCAAAGCTAAGGCTGACAGCGAATCGGATGAGGACAGGGGTGACCTCATCCAATTCTACAATTCTGTTTATGTTctgaaaatgaaatcttttgCACTCAGATATGCTCATCCAGCAGCTGATAGTAGAgTGGATGCACCCCCGTTATCTCCATTCCCCTCACTGCGAGCTCAGCCTCTCTCCCCACGGCGAATATCTCAGAGACACTCCGTCTATTTGTCTCCTCACAAAAATGGTTCCTGCCTCAAACACAGCTCTGCCTACACATACAAGTTTACTGGCAGCCCATCTAAGGAGTTGAGCGACATCAACCGAATGATCCGTCAGGGAAGTGTGAGCAAGAAGAGAGCTTTTACCATGGAGGGAGATGAGACCGAGTCTCCTACCAAACGTTTGAGCCAGGAGAGTGAGGATGTGCTGCTCAAACGCCTGCAGGATGTTGTGACTGAGAGAGCCAATCACTGACTGATCATGCACGTGATGCATGTGTCCCCTCTCAATGATGAAGTTGCAACTTCCAAAGTTTGTAACATTCACAGACCAATTACAATGCAGCATGACCTTTATAACCAAAGAGCACCTCACAGTCCTGGCCAGGGTGCTGAGCCAGTGGATCATGATTGACAGTCTattgtagaaaattaaaaattgtgggCTTTGGTAGGATTTCACATTCCTTGAAAATTAGGTAAGTACTTGGGTATTCATTTCAATCATTCTCAAAAGGCAGCAAAATAAGTTAGCAACACATTGTTTAACCAGACATTGTACTTTATCTTGCCCCTATGGTATATGAAGCATCATTCACAGCActctggagggaaaaaaaaaaatcacacacagattttctGTATACATTAGGATGTATAAATGGGGCTTAAGTGATTATTTTACTGACCACATCATTAGTGTGTTCAACCTTTGTGCTGCAAACACATGTAGCACTGTATTATGTTGTGTAGTATCTACACTtctgagttattattattttatccaaGTCATGTTATGTGGAGAAATTTGTGTTCTGATGTACATCACTAATAGCATTGGTATATAATGTCACCAATTTAATCTTCTTAAGCCTTAGATGCTTTGGCTTGAACAAAGTCAGTGTTTACACGGTCTTTAATTGTGGTCTCTGTGATTACTCATTTTAGTCTTATAttcttattcattcatatttttttattgttttgtttccaCTGTAATGGagcaagtaaatattttaaaaacctccATTTATTAATTTGGAATATTCTCGGTATTCTCAGGAAGTCTTTTATCTTTGGACCTGAATAATTTTAGGGTGAGAATCAAGCCTTAGCCTTCTGAGGACATTGTTGGATATTATTGTTTGTTGTTCAGAATAGTGTTTTTGAATGTCTTGTTAATACACAGCCAATAAATTATTATTGGTTAAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04681 RBL1; retinoblastoma-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26366 lncRNA upstream 8366 5708966 ~ 5709171 (+) True G22110
TU26352 lncRNA upstream 16561 5700728 ~ 5700976 (+) True G22097
TU26298 lncRNA upstream 107306 5548476 ~ 5610231 (+) True G22054
TU26287 lncRNA upstream 164566 5493722 ~ 5552971 (+) False mych
TU26261 lncRNA upstream 214306 5501645 ~ 5503231 (+) True atp5f1e
TU26387 lncRNA downstream 25618 5782306 ~ 5786459 (+) True G22123
TU26327 lncRNA downstream 36396 5793084 ~ 5794691 (+) True G22072
TU26390 lncRNA downstream 42415 5799103 ~ 5800012 (+) True G22126
TU26394 lncRNA downstream 48255 5804943 ~ 5807667 (+) True G22130
TU26322 lncRNA downstream 54069 5810757 ~ 5811035 (+) True G22070
XM_026918775.2 mRNA upstream 16868 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 164563 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 164563 5550065 ~ 5552974 (+) True mych
XM_034312823.1 mRNA upstream 179100 5522924 ~ 5538437 (+) False ergic3
XM_034298497.1 mRNA downstream 132893 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 211510 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 280026 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 280026 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 280026 6036714 ~ 6049905 (+) False abraa
TU26124 other upstream 508673 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 628959 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 957892 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1057414 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1365789 4351677 ~ 4351748 (+) True trnah-gug_1
TU28587 other downstream 3694237 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3694237 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3835253 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4138557 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4441278 10197966 ~ 10198455 (+) True G24500

Expression Profile