RNA id: XM_026913704.2


Basic Information

Item Value
RNA id XM_026913704.2
length 2615
RNA type mRNA
GC content 0.49
exon number 13
gene id pkp1b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9694499 ~ 9711838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAACAGGTAAACTGTAGGCTTCTTCCTCAGTCAGGAGGAGCATCAGGGACGAGGGACTGCGCACCCATTGTACTCAGTTCTCGTGTGCTTCGTTCCCGGCGACAGGCGAGTGTCCAAAATGACCCAGGAACCGTTGAGATCGGCTTTATCTATCGGGGAGATCGGAGAGACGTCGCTGGCGCTTCCGTCAGACGGAGATTCCCGCTCGGGCCAGAGGCGCGTCATGGAGCAGGTTAGCACCATGAAGAAGAGCAAGAGCAagtacagcagcagcagaggatCAGCAGGAACACTGTCCCCCACCAGCCCCAAGAGCGACAGTGTTTTTTATGAATCCAAGTTCTCCCCCACCAATCTAAATGGATCGGACTTTTTGTTTGAAAGCACCTTGGCAAATGGACATGCAAAAACGATGAAACAGAAGCAGAGCATAATGCAAAGGAGCGTGAGCACCAGGTCAGCCAACTATTACAGGATGCCAAGTAACAACATATTACCGAACAGCCTTCCCGCTCCAAGCCACCCCAGTGCCCAGGCTGACCTCTATGCCACTCAAGTGGGCACTAAGAGTAACACCACCCAGTGGACCCAGAAGTACAGGCAGAAAAAAATCCTGGAAAGGAGTCACAGCCAACCTCCACTCACCAGCCCTGTCCAAATTAAAGCAAATAGCAGCTTTCAGAGCACCAGCAATCAGGTCACTGGCAGCAATACCGTCAACAGGCGGCCTCCTTCTGCCCACTCAAACTCTGAGCCCAAGTTCTCAGCGGTTAGCAAGACCAAGACTGAGATGAACGGAATGAATGGAGAGGCAAACATGTCTGATATCACATTATCAGAGGCGATATTCTGCATCAACCACGTGGATGAAAGGTATCAGCTGCATGGAGCTTCCGTTATTCAGCATAGCACATACACAGATGACAAGGCCAAAGAAGAGGTACGGAAGCGAAATGGCATTGCTCCGTTGGTGTCCTTGCTTAGCAGCTCAAACCCTCAGATCCAGCTAGCGTCAGCCTCCGCCTTGCGTAACCTTGTCTTCAAGAATTCAGCCAACAAGGAGGAGGTCCGGTGCACAGGAGGGTTGAACGAGGCTTTGCAGCTACTCCGAGACACTAACTCAGCCGAAATTCAGAAACATGTGACCGGTCTTCTGTGGAACCTGTCCTCAGAGGAGAGCATTCAGCCCGATCTCCTCCGTCAGGCTCTGCCTGTCCTCACCGAGACAGTGCTGCAGCCGAACGCAGACACCTCAGCCATCGGGTCTGATATTGAACCTCGTACTGAGAGCTTctgcaatgctacagcatgtCTACGAAATCTGAGTTCTGGCAAACTGGTAAACCGGCAAGCCTTGCGTAACTGTGAGGGCCTGATTGACTCACTAGTCACACACCTGCAGTCTTGTGTGGACGACGGCAATATGGATGATAAGTCTGtggagaactgtgtgtgtgttctgcacaACCTCACCTATCAGCTGGAAACCGAAGTGCCTGCTTTGTTTACCAAGATAAACGCGCTGGCTACGGCTTCTGAAAGCCGCACTAATGCCGCTGATACCGGCCCTATCGGCTGCTTTAGCAACCAGAGCCGCAAGATCCAGCAAGAGAGCAACTCAGAATACCTGCTGATGGATGATTTCAATCCCAAAGGCAAGAGCCGGCTTATTCACTCAAAGACTCTGCAGTTGTATCTGAATCTGCTGCAGTCCAGTCAGAACACAAGAACTCAGGAGGCATGCTGTGGAGCACTGCATAACCTCACCGCCAAGAAGGGCATCGTGTCAGATGTGTTGAGTCAGACCATTGTTCAGAAGCTGAATGGTCTGCAGAGCCTCTCTCCACAACTACAGTCACAGAATCTGGCCCTGAACAACAGCGTCACCACACTGATAGGGAACCTGTCTCGAACTCCACAGCTGCACAGAGTTTTGGCTCGTCAGGCTCTTCCGGGTATCGTCAAGACCTTGACATCCGACCTTACTCAAGAGTCTGATAGCACCATAGCAGTGGCCTGCCACACGGCAAACAACCTGCTTAGGGCAGAACCTGAGATGGGGAAGAAACTGCTAAGCAATGCCCTGATCAACTCACTGAATAACATGAGTCAAAACATAGCCATGCCGAAGGCCAGTAAGGCAGCAGGAGTTCTCCTTCATAGCCTCTGGTCTGACAAGACTATTCAGAGTTTCCTCAAGAAGCAAGGGATGAATAAGAAGGTCTTTGTGAATGAGACAACTTCAGCTGCACTCAGGTCTTTCCAGATTATTGAGTAATTTGATCATCCTGCAGTTGACTTCTATAAACGTCCAGCTCTACACAACAGCTACAGAAAATGACTTATATAACTATACATATGCAGTAAAATTACATGTTCCTGTCCGCTTTGAATATAAATAACTGCAAAGGTAATGAAAAAGCAGCTGAGGGGAATGTAAATGAGCTTCACAGCGCTGAGTTTgcacagaaatggaaaaaaagttcTGTATCTTTGTAATTCCACATTGATTTTTTGTTGCATGGAAGCACTGTAATGGGAACATATTACATTTGTATTGCAATTTTTGAAAAATGGCTTTACATTTTCTATCTATTTGATGGATTGCTATTTT

Function

GO: NA

KEGG:

id description
K10387 PKP1; plakophilin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28665 lncRNA upstream 25108 9658633 ~ 9669391 (+) True G24183
TU28657 lncRNA upstream 79036 9613112 ~ 9615463 (+) True G24178
TU28656 lncRNA upstream 81886 9612389 ~ 9612613 (+) True G24177
TU28638 lncRNA upstream 102853 9591428 ~ 9591646 (+) True G24162
TU28636 lncRNA upstream 104914 9589318 ~ 9589585 (+) True G24160
XR_003403551.2 lncRNA downstream 26179 9738017 ~ 9739451 (+) True LOC113534952
TU28774 lncRNA downstream 46747 9758585 ~ 9758966 (+) True G24283
TU28780 lncRNA downstream 57450 9769288 ~ 9769501 (+) True G24289
TU28873 lncRNA downstream 156769 9868607 ~ 9954984 (+) True G24354
TU28891 lncRNA downstream 226559 9938397 ~ 9941183 (+) False manbal
XM_026929606.2 mRNA upstream 1533 9682331 ~ 9692966 (+) True smpd2b
XM_026929596.2 mRNA upstream 1533 9682331 ~ 9692966 (+) False smpd2b
XM_026916986.2 mRNA upstream 21854 9639106 ~ 9672645 (+) True tead3b
XM_026917003.2 mRNA upstream 23963 9639105 ~ 9670536 (+) False tead3b
XM_034312998.1 mRNA upstream 23963 9639106 ~ 9670536 (+) False tead3b
XM_026921885.2 mRNA downstream 76825 9788663 ~ 9855541 (+) True nav1b
XM_026925788.2 mRNA downstream 144133 9855971 ~ 9868275 (+) True mybphb
XM_026925796.2 mRNA downstream 144133 9855971 ~ 9868275 (+) False mybphb
XM_026925802.2 mRNA downstream 144134 9855972 ~ 9868275 (+) False mybphb
XM_034314745.1 mRNA downstream 162870 9874708 ~ 9923165 (+) False LOC113530691
XR_004577034.1 other upstream 97645 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 240037 9450925 ~ 9454462 (+) False hmga1b
TU28588 other upstream 240037 9450925 ~ 9454462 (+) True hmga1b
XR_003402786.2 other upstream 3941395 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4485635 5208346 ~ 5208864 (+) True G21901
TU28879 other downstream 183407 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 486128 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 1042677 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 1194362 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 2492691 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2

Expression Profile