RNA id: XM_026913770.2


Basic Information

Item Value
RNA id XM_026913770.2
length 1576
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC113526373
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15144650 ~ 15150334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTTGACGTGTAAAGCGAGCACGCGCGTTTTAGTCTTCTCAGTCCGCAGACAGGGAAAAGATGGCAGCGTCCGTGTGCAGATTCGGGGGAGCCGTGGGCCAAGCTCTGGCTAAAGCTCGTAGTCCTGTTCTGCTTTCTCTGAGACGGGGACAAGCAACTGTGTCTTATGCCCAAAGCCTGCTGAGTGTTCCAGAGACGCGGGTCACAACGCTGGAGAATGGGCTGAGAGTGGCCTCTGAGACGACAGGTCATGGCACCTGCACTGTTGGCCTGTGGATCAATGTCGGTAGCAGATATGAGTCTGAGAAGAATAACGGTGCTGGCTTTTTCTTGGAGCACTTAGCTTTCAAGGGCACAAAGAAGCACACCCAGGCTGCTCTTGAGCAAGCAGTAGAGTCAATGGGAGCTCATCTTAGTGGATACACTTCTCGTGAACACACTGCCTATTACATGAAGGCCCTCGCTAAGGACCTACCAAAAGCGGTGGAGCTCTTGACTGAGGTGGTGCAGAGTGCATCGCTGAGTGAGGCTGAGATAGAGCAGCAGAGGGGAGTGGTGCTCAGGGagctggaggaggtggaggccAGTCTGCAGGATGTCTGCTTGGATCTACTCCATGCCACTGCATTCCAAGGCACACCCCTGAGCCAGAGTGTACTGGGACCCTCTCAGAAtgccagGACTCTGACACGGCAGGATCTGGTGGAGTACATCAACAGTCACTACAAGGCTCCTCGCATGGTGCTGGCCGCTGCTGGAGGTGTGAACCATGAGGAGTTGGTGGGGCTTGCAAAGCAGCACTTAAGTGGTGTCTCATTCGAGTATCCGGACGACGCTGTGCCCCTGCTGTCCCCTTGccgcttcactggcagtgagGTTCGAATGCGTGACGATTCCATGCCCCTGGCCCATGTTGCTATTGCAGTAGAGGGGGCTGGGGCTGCCAGTCCTGACATTGTGCCACTCATGGTTGCTAATTCCATCATCGGCAGCTATGACATCACATTTGGAGGCGGCAAGcacctGAGCAGTCGCTTGGCAAGTCTGGCTGTAGAAGGCAACCTTTGCCATAGTTTCCAGTCTTTCCACTCCTCCTACAGTGACACTGGACTGATGGGCATCTATTTTGTCACAGACAAACACAAGATTGAGGACATGATGCACTGGGCTCAGAACGCATGGATGAACTTGTGTACCACAGTGACAGAGAGTGATGTAGCCAGAGCAAAGAATGCTCTGAAGGCCAGTTTAGTAGGACAGCTGAATGGTACCACACCAGTCTGTGATGACATCGGCAGGCACATTCTCAACTACGGTCGTCGTATCCCATTGGCTGAATGGGATGCCAAGATTGATgCTGTGACGCCCAAGATAGTGCGTGACGTTTGCTCCAAATATATCTATGACAAATGCCCCGCTGTGGCTGCTGTTGGTCCAATTGAGCAGCTTCCTGACTACAACAGAATGCGTAGTGCTATGTACTGGCTTCGGTTCTAAATGctcatttaatttcatcagaTTTCCCATTATCTCTCCTTCTTTTATATACTGCTCCCCTTTGCaaacacttccac

Function

GO: NA

KEGG:

id description
K00414 QCR1, UQCRC1; ubiquinol-cytochrome c reductase core subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32642 lncRNA upstream 37476 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 264226 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 294529 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 352028 14792411 ~ 14792622 (+) True G27450
TU32212 lncRNA upstream 540104 14562217 ~ 14604546 (+) True G27311
TU32702 lncRNA downstream 126306 15276640 ~ 15278716 (+) True G27733
TU32738 lncRNA downstream 321198 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 339202 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 464690 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 624042 15774376 ~ 15775849 (+) True G28040
XM_026911681.2 mRNA upstream 16391 15119491 ~ 15128259 (+) True rbm38
XM_026911575.2 mRNA upstream 27563 15109002 ~ 15117087 (+) True rae1
XM_026911506.2 mRNA upstream 28474 15109002 ~ 15116176 (+) False rae1
XM_026911392.2 mRNA upstream 40348 15064895 ~ 15104302 (+) True LOC113524957
XM_026931131.2 mRNA upstream 81334 15052308 ~ 15063316 (+) True LOC113536922
XM_026919389.1 mRNA downstream 8600 15158934 ~ 15159317 (+) True LOC113529833
XM_026924339.2 mRNA downstream 15727 15166061 ~ 15170136 (+) True cidec
XM_026909635.2 mRNA downstream 21467 15171801 ~ 15190025 (+) False LOC113547608
XM_026948053.2 mRNA downstream 21467 15171801 ~ 15190025 (+) False LOC113547608
XM_026948136.2 mRNA downstream 21467 15171801 ~ 15190025 (+) False LOC113547608
XR_004577012.1 other upstream 1643354 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1645285 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 41250 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 128493 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1030984 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3624436 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3667068 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile