RNA id: XM_026914107.2


Basic Information

Item Value
RNA id XM_026914107.2
length 9591
RNA type mRNA
GC content 0.46
exon number 48
gene id kif1aa
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18988003 ~ 19049750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCCTCCctcagtgatgatgtcactggCTCAGTCAGGCTCAGCATCACTGCTCTGAGCAGCCAGCAGAGCCATTTTGGCTTCTGCATTACAGACAGCATCAGGTCTTCTCCTTTAAAAAGCCTCCACCCGGATCAAGCAGGCCTCGCCGGGCATCCAGATACCCCTTTCCCCCCTCTTCCAAGGACCTCCCTCTCCATCGGGGGATTGAGGACACGGGGGATATTCTTTGATTTGTCCCAGAACTAGACCTCTGGGAGCAAATCACCAGATCTACAGTGTAGTAAAGAGCTCAGAAGACAAATACAGCACTGTAAAGGTTTGTGTCTGTTGGTGTGGACAGTGGGAGCTGTAAGGAGGCGCCATGGCGGGGGCCTCGGTGAAGGTGGCGGTGCGGGTTCGCCCCTTCAACTCGCGGGAGATGAGCAAAGAGAGCAAGTGTATCATCCAGATGTCAGGAAACACAACCACTATCATCAACCCTAAAGTACCCAAAGAaaccaagagcttcagttttgATTACTCTTACTGGTCACATACCTCGCCAGAGGACATCAACTATGCGTCTCAGCAGCAGGTCTACAGCGACATTGGCGAGGAGATGCTGCTCCATGCCTTTGAGGGCTACAACGTCTGCATTTTTGCTTATGGCCAGACTGGTGCTGGCAAATCATACACCATGATGGGCAAACAAGAAAAGGACCAGCAAGGAATAATCCCACAGCTGTGTGAGGATCTTTTCACTAAGATCAATGACAGCAATACTGACAACAGCATGTCCTATTCTGTAGAGGTGAGCTATATGGAGATTTACTGTGAGCGTGTACGGGACCTGCTGAACCCCAAAAACAAAGGGAACCTGCGAGTGAGAGAGCACCCACTGTTAGGCCCTTACGTGGAAGATCTCTCCAAACTCGCTGTCATGTCCTACAATGACATTCAAGACCTGATGGACTCAGGAAATAAGGCCAGGACGGTGGCTGCCACCAACATGAATGAAACAAGCAGTCGCTCTCATGCTGTCTTCAACATCATCTTCACACAGAGAAGGCACGACTCAGAGACAGACAACACGTCTGAGAAGGTCAGCAAAATCAGTCTGGTGGATTTAGCCGGCAGTGAAAGAGCTGACTCCACTGGAGCCAAAGGCACTCGGCTCAAGGAGGGAGCAAACATAAACAAATCCCTCACCACACTAGGGAAAGTCATTTCAGCTTTGGCAGAGGTGGATTCTGGATCAAACAAGaacaagaagaaaaagaaggtgGAAAGTTTTATCCCATACAGAGATTCTGTACTCACATGGTTACTTCGAGAAAATTTAGGTGGAAATTCTCGCACTGCCATGGTAGCTGCTCTCAGTCCTGCAGACATCAACTATGACGAGACTCTCAGCACGCTCAGGTATGCAGACAGAGCTAAGCAGATCCGCTGTAACGCTGTCATTAATGAGGACCCCAACAACCGGCTGGTGCGTGAGCTGAAGGATGAGGTGTCACGCCTGAAAGAGCTCCTCTACGCCCAGGGCTTAGGTGACATCATTGAAAACTTTTCTGATTACAAGAACAATAACAATACTGGCCAAGCTGTCAATGAAAGGGGTGATTTCTCCGCAGTGACCAATGCCATGACAGGGATGAgtccctccccctctctctccgcCCTGTCCAGTCGTGCTGGATCCATTACCAGCCTGCATGACCGCATCATGTTCAGCCCTGGGAGTGAAGAGGCCATTGAGAGGCTCAAGGAAACAGAGAAAATCATTGCTGAGCTCAATGAAACATGGGAGGAGAAGCTTCGCCGTACTGAGGCCATCAGGATGGAAAGAGAGGCCCTGCTTGCTGAGATGGGTGTAGCCATGAGGGAAGATGGAGGAACTGTTGGCGTCTTTTCACCCAAAAAGACTCCTCATCTGGTGAACTTGAATGAAGATCCTCTGATGTCCGAGTGTCTCCTTTACTACATTAAAGATGGAATCACCAGGGTGGGAAGAGAGGATGCAATGACAAGGCAGGACATTGTCCTCAGTGGACACTTCATAAAGGATGAGCACTGTATTTTCACTAGCAGTGCAGGACCTATGGGAGAAGTCATTCTGGAGCCATGTGAAGGAGCCGAGACCTACGTCAATGGGAAGAAAGTGACAGAGCCCACTGTTCTCAGATCAGGGAACCGCATCATCATGGGGAAGAGCCATGTGTTCCGCTTCAACCACCCGGAGCAGGCGAGGCAGGAGCGGGAGAGGACTCCATGTGCCGAGACTCCGGCAGAGCCTGTAGACTGGGCCTTCGCTCAGAGAGAGCTGCTAGAGAAACAGGGCATCGACATGAAACAGGAGATGGACCAGAGACTTCAGGAGCTGGAGGACCAGTATCGCAAAGAGAGGGAGGAGGCCAATAACCTTCTGGAGCAACAGAGACTAGATTATGAGAGCAAGTTGGAGGCCTTGCAAAAGCAGGTTGATCGTTACTATCCTGAAGCagcagaggaagaggatgaaCCTGAGGAGGAAGTGCAATGGACTGAGAGGGAGACCGAGCTGGCGATGTGGGCTTTCAGAAAGTGGAGGTGTTACCAGTTTACCTCTCTCAGAGACCTTCTCTGGGGCAATGCCATCTTCCTCAAAGAGGCCAATGCCATTAGTGTGGAGCTCAAAAAGAAGGTGCAGTTTCAGTTTGTGTTGCTGACCGACACACTGTACTCTCCGCTTCCTCCTGACTTACTGCCTTCTGATGTGACTAAAGAGCGTGAGAAAAGCCCATTTCCCCGCACCATCGTGGCTGTGGAGGTGCAGGACCAGAAAAATGGAGCCACGCATTACTGGACCCTGGAGAAGCTCAGGCAGCGTTTGGACCTGATGAGGGAGATGTATGACCGAGCTGCGGAGGTTCCTAGTGGTGCAACAGAGGAGTGTGACAGTGTGCTAACGGGAGGAGACCCTTTCTACGACCGTTTCCCTTGGTTCCGGCTGGTTGGGAGGGCCTTTGTGTATCTGAGTAATCTGCTGTATCCTGTGCCCCTGGTACATCGAGTAGCCATTGTCAGCGAGAAGGGAGAGGTCAAAGGTTTCCTGCGTGTAGCAGTGCAGGCAATATCAGCTGATGAGGAGGCACCCGATTATGGCTCAGGCGTGAGGCAGTCTGGAACGGCCAAGATCTCCTTCGAAGACCAGCAGTTTGAGAAGttccAATCAGAGTCCTGCCCAGCCGGTCTCTCCCGCACCGGACTTTCCCAGGAGGAGCTGCGGATCGTGGAGGGTGAGGGACAGAATGCAGAGATGTTGCCATCCGCTGATGAGGTGAACAACAACACCTGTGCAGCTGACCAAGAAGATCTGGACAGCACTGTGAAAGATGGTGTTCTGGATGGAGCTTTGGACCACCTGAAGATTGGAGAGGTCTTTACATTCAGAGTCACCGTGCTCCAAGCGTCCAGCATCTCCGCTGAGTATGCAGACATCTTCTGCCAGTTTAAttttatccACCGGCATGACGAGGCGTTTTCCACAGagccactgaaaaacactggacGAGGTCCACCACTGGGCTTCTATCATGTGCAGAATATTGCAGTGGAGGTCACTAAGTCTTTTGTGGAGTACATAAGGACCCAGCCTATTGTGTTTGAAGTGTTTGGTCACTATCAGAAACAGCCCTTCCCTCCACTGTGCAAGGATCTAATCAGCCCATTGCGTCCATCCAGAAGACAGTTCCCAAGAGTCATGCCTCTATCCAAACCAGTACCTGCTACTAAGCTGACGACCCTCACACGACCCACAGCCGGACCCTGCCACTGTAAATACGACCTAATGGTATTATTTGAGATCTGCGAGCTGGAGGCCAATGGAGACTACATCCCTGCTGTAGTGGACCACAGAGGTGGAATGCCCTGTCATGGCACCTTCCTGTTACACCAGGGAATCCAAAGAAGAGTGACAGTGACTATAGTGCATGAGACAGGGGGTGACATTAATTGGAAAGAGGTTCGTGAGCTGGTTGTAGGCCGCATTCGAAACACACCAGAAGCAGACGAGACCATCATCGACCCCAACATCTTGTCCCTTAACATCCTGTCTGCTGGATACATCCAGCCAACTCCAGATGACAGCATTTCCTTGGGAATTGATCCTAGGACATTCTACCGCTTTGAAGCTGCTTGGGATTCATCCATGCACAACTCGCTCTTGCTGAACCGAGTGACTCCATATGGGGAGAAAATCTATATGACTTTGTCTGCTTACTTGGAGATGGAAAACTGCACACAGCCTACAGTAATTACCAAAGACTTCTGCATGGTGTTTTATTCCCGAGATGCAAAGCTCTCAGCCTCACGCTCCATCAGGAACCTGTTCAGCAGCGGGAGCCTGAGGCCATCTGAAGGAAACCGAATTACTGGTGTGTATGAGCTCAGTCTGTGCCACCTGGCAGATACGGGCAGCCCAGGGATGCAGAGAAGGCGCAGGAGGGTGTTAGACACATCCGTGGCGTATGTGCGAGGGGAGGAGAATTTGGCTGGATGGAGGCCCCGCAGTGACAGCCTCATCCTGGACCATCAGTGGGAGCTGGAGAAGCTCAGCCTCCTGCAGGAGGTGGAGAAAACCAGGCACTACCTCCTCCTGAGGGAGAAGCTGGAGTCCACCCTGCTGCTGGGCCAGGAGGTGCCGCTGTCCTGCGTGTGTGAAGATCTGACCGAGTCCTCCTCCCCCTCCAAACAGCTGGGGCAGGGTCACGACCCTGACGCTGACCCCGGGCATGAAATTACCAATGAAAGGCAGCGCAAGCTTGCCGCCAAGTGTTTGCGCTTGCTTACCCACACCTTCAACAGAGACTACAgtcacgtgtgtgtgagtgccaGTGAGAGCAAGctGAGTGAGATGTCTGTAACACTGATGAGAGATTCCACCTCGATCTCTGACatcaacacactcacaccctcCTCCACCTGTCCCTCGCTGGTGGAGGGACGCTACAGCAGCAACGCTGAGCTCAGACCCCCAGCACCTCGCTCTCGTGCCGTGAGCCCCAACCGAGGCTCTACATCTGATGGAGAGGGCAAGAAGTCCCCCAGCGGAGCTCCAGAGTCCAAATCAAGGACCCACACATTTGTCCCTGACATTCAGGAGATCCGCGTCAGCCCAATAGTTTCGAAAAAGGGCTATCTGCACTTCCTGGAGCCGCACACTAATGGCTGGGTGAAACGCTACGTGGTGGTGCGCCGGCCGTACGTCTACATCTACAATTCAGAGAGAGACTCAGTGGAGAGAGCCATCCTTAACCTGTCCTCTGCACAAGTGGAGTACAGTGAGGACCAGCAGGCCATGCTGAAGACTCCCTACACATTTGCTGTGTGCACAGAGCATCGTGGGATACTTCTGCAAGCCGGTAATGACAAAGAGATGCATGACTGGCTGTATGCATTTAACCCTCTCCTTGCTGGCTCCATCAGGTCCAAACTCTCCAGAAGAAGAGCAGCGCAGATGAGGCTTTGAGAGGATAAAGACAACAGAGCTCACAAAGACTGTCCCTGTAAATAGAGTCCTCCGTACCTGCGCCCGGTCCAGTCTCTAACGCTCGTCACACTCCTCCCTTCCTGTGTGTACCTGCACTCACCCTATCTAGCACTAAGCACCTGTGTACTAAAGTCTCACATTGCTGTGGGTCTACCAGGACCTGGCTGTTCAACCAATAACCCTCCTAAGAATCTAAGGCCACTATGTTTTGGATCAGTGTAGTAATGGAGATTACAAGCATTTGCTTAGCTTCATTTTAGATGCTTATATAATCTCACAAAAAAGCTCCAGCACTCCACAACGGAAGAAAAACAAGCCTGACACTTCCAGATCAAGTGAAACCCATTTTAACCAGATTTGTTAAGATGAGtaacaaaaaagtaaactaGATGGTCAATATAGAGAtgtctcagtcacatgaccttACTGTGTTATTCTTTACAGTTGAATCCGGTCAGTATTTAAGTCAGCCAATAATATCTTTATTGTCAGCTTCACGTTTCAGCTTCACTGACACATGTTAAGGAGGCTGTATTCTAAAATGCATACTAAATTATCATACCAGATAGTATGTCAGAATAGCATGCTATACTGTTttacatactatttagtatagTAGTGTGCAGTTTGGGATTTAGCCAGATTTTCTCGGTTCAGCCTTAGTGCAGGTTTTGGATAGTCTCTATAGAAATTTATATAGGATAGTATGACATAAAAAGGCCCTGCAATGAGAAACATCAAACATCGCTCATGAAGTTTtctcacaaaacaaaacaaacaaaaaaaaaacaaagagatggACGGTTGTGTGTGAGTCTTATCTAAATTGTATCATAATCcagtttaatattttctaaaatgaacTTATCCCTTAAAGATCTTATCTCTGGTTGATTTACTTtgaagtttatattaaaatctcGTCAAGTTaggtatttatttaacatgcatttatttattttgttgtgtatttattgacaATGTTTTGATGAAGTTTAATGCAATTATCTGCAAATGGCACTTTCCCCCCATGAGTTTTACTAACCTATTGCTTATGTATCATATGACTCTGCCTCCTCGACCCACAgaatactttcagaggagagGGACAGGGAATAGGATGTGACGCTGTGATGGCTGCTACTATGTGTAGCTCACAtgaatgtttcatttataaGTTGTTAGAAGCGAGAAAGAGCCTTCTGCAAAATATCCAGTTGTGAAACAGAGAAAGGATCATTACCCAGATCAGTTAAAGACAAAAGTCTGTATAATCATAAACTGCAGGTTTTTAATGATGTATATTATATGATTTTACTCACGTCCCATGTTTCTACATTCTCATTTGCTGCTTTCATTCTTCAGGTCTCCCAAATCATGTCAGCTCATTAATCAAACCTCTCACCATGCCCCACGTTTGATATATTGGAGGTTGAGTTTTCATGCTGTGCACTTATTATACCTAAGTCATTTTGTAAGCATATCTTGTGATTGGTCTGGTACTTCTACTTCTCATAtacctgctgaaaaatccagcttggtctgaccagctagCAGCAGCCAAAACACAGGCACAGCTAGTCAAGCTGGTAGATCAGGGCTATTCAACAAATACAATAATTTGTAAATGACCAGTTACAAAAATTTCCTTGCTTGggtctggataagcaactaacatgactgaatggcaacAACCagtatggctataaataagactattcaaagtggttatgttttgtttcatagtggaGCTTCATGTTTGCACTTTTGACTAGTGCAGTGGACTCTGAACATTAGAGATACATCCATCAGTTTTGCATTTGACACAAAgcataaacacatacttctctgtacaatcatctttaaacattctgtctTCATTGTTGACTGTCAACAAGCCATGTCGTCAGCACACTAATCaaaccagagagggtaaataaaaatgaaaaatatcaaaTTGTGTGAACATTCTCCCCTTCTGGTCTAATGTTTTAGTCCTGTAGCTGGTCGCTGGTCCAATGGGCTGCCTTCAGCAAAGTAATTTGGGCgaatgtgtgtgattgcatAAACTGAAACAGAGGAAGCCAAGCTGGATCATATTCAGAAAACTGGAGGCCCTGAACTACAGCCACAATCTGCTGCAGTAAAAATTTTTTCAAGTACTCAGTTCAGTCCACTGAAATACCATGCTGGCTCTGCATCTGGACCATGGTCCATCAGCTGATGCCCCATGTGGTAGACCATGTTTGTCAAATGGTACCAGTAGAAAGGGAACCATTTCCAAATTATTGCTAGTAATGCAACATCATAGacaaatttttaaagaaaacacaaaaccaaggccattagaaaatctcaaacatttatagatcattttaattaagaaataggGAAGctgaaacataataataaaataaaagatgatgATCTACTAGTTTAACCACCTCAtttgtgttttggcagctggtagctgaTTAGACCAAGCTGGATTTCTCAGCAGGGATCTTTCTTGTTCACACAGATCAACAAATCTGCACATGGAAATGGACCTAACgtgtacagtgtgttttgtgatgtTCACATAAACCATCCTTTTTCAAGCTTCATGTTACCTTATATTTCCCACAAACTACAAAATATTGTAGTGGAGACTGCAAGCTTAGAGGCTGCAGTATGCATTTTAATGGCACTCATACTGTAGGGTTAATAACTAAAGTCTCATTATTGGTTAGTGTGTGATATGACTGTTGGCTTAATGTTTAACGAGAAGAGCAAACAGCTTGTGTCTGTGTTGTTAGCGAATTGCCACTGTTTGTGTACGAGTGAAAATCCACACTGCGCTGCTGAAAGTGCTGGTTATCAGAAGCTTCGTCATGGTTATAATTTCCGGGAATGTTACACACCATTGATTTGCGCTGTTGTGATTGGTCATGttcacctgctttttttttcatgaaagttAACCTTTacctttttgagttttttttttatgctgtgtTTGTCTGCACAGGCAAAAGTGGTTTTGTTACTATGACAATGACTTGGAACAGATCCCAACTATCCGTGTTTATTAGGACTAAGCCAGATGGATTGCGATGTGGTATTTCTCTGAGTTCTCCTTAGGGCAGATGGGAGCATGACTTGAGGCCAGCCAACCTCCAGAGCATGCTTAGTAATGCCAAGACTCAGGCTATCTGAGTGATATTATCATCTGGAGAAATGTGTATTGAAGTATAATGGCTATGAATTTATGACTATGACTTTAATTGTTTGCTTATGTGAACTTGACCAGTCACTGAAGCCACTTACATTGCAAAGTGTTGACTTATCAGATCTACTTATAATGCTGTTCTTGTTAACTGCACAGTTCAATATAGAAAGACGCTCTTTGTGCTGTTTGCAATGAACATCATCTGAATAAGTATGTCCAGTTTTGCATGGAAAGATTGTTAAACTGCCTACATATCTAAACAACTGTGCTCCAGTGTTCCAGACTGTAACTGAATCCTCTGATCCATTTCTAAAGCTTTACGTTTGTGTCTGCACAtatgtgaaagaaaatgaaatattagtCATTTTGTTCAGcagcgtgtgcatgtgtgcagtTGTCTTTTGTCTGTGCACTTCTTTGAGAATGTTGTTGAGAGTGCGTTGGACGAAATCTTGCACCTTCTAGCCTGTGTCACTGAATGACAGCCAGGCACGACATTATAATTCTCAGTCATTCACCATCACAGAGCTTACATACAGCAGCCtccatgagaaaaaaaaacaaaacaaacaaatgatagGCTCTTTTCATCAACAGCATTTCTTTGTGTGCTTCCATTTTCATCATATGCACAAACTccattcactgacatttttctatCTTCTCGGTTCTACTTTGCATTGTATATAAACATGATTGCTGTGAATGGTGTAATATGCAGCTGTAACCCATTGGTACCATCTTAAATGGGCAGTAGTTCAATATGTCTTGTGAGTGTTTGAGTTATGAGTCAAAATGTTTGTGTAGCCTACACCTTAACACATTGtctgatataaaataaatgtggaaCTTATGCAACACTataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34910 lncRNA upstream 39491 18933601 ~ 18948514 (+) False boka
TU34870 lncRNA upstream 152284 18818725 ~ 18835721 (+) True G29569
TU34849 lncRNA upstream 296998 18688653 ~ 18691007 (+) True G29561
XR_003403164.2 lncRNA upstream 520685 18464884 ~ 18467320 (+) False LOC113530672
TU34992 lncRNA downstream 476 19050226 ~ 19050438 (+) True G29640
TU34993 lncRNA downstream 1074 19050824 ~ 19051043 (+) True G29641
TU35001 lncRNA downstream 36174 19085924 ~ 19086161 (+) False LOC113533886
TU35002 lncRNA downstream 36708 19086458 ~ 19086693 (+) False LOC113533886
TU35019 lncRNA downstream 142799 19192549 ~ 19195409 (+) True G29656
XM_026916690.2 mRNA upstream 30225 18951689 ~ 18957780 (+) True atg4b
XM_034298238.1 mRNA upstream 39268 18932683 ~ 18948737 (+) False boka
XM_026939069.2 mRNA downstream 2372 19052122 ~ 19060672 (+) True scly
XM_026939015.2 mRNA downstream 3382 19053132 ~ 19060672 (+) False scly
XM_026938931.2 mRNA downstream 3528 19053278 ~ 19060672 (+) False scly
XM_026939139.2 mRNA downstream 3660 19053410 ~ 19060672 (+) False scly
XM_026926326.2 mRNA downstream 11347 19061097 ~ 19087211 (+) True LOC113533886
TU34871 other upstream 161085 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 170530 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 2805702 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3693651 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3796349 15191584 ~ 15191656 (+) True trnaf-gaa_15
TU35395 other downstream 484691 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1060380 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1965108 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 3548591 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 4426201 23475951 ~ 23476023 (+) True trnaf-gaa_16

Expression Profile