RNA id: XM_026915455.2


Basic Information

Item Value
RNA id XM_026915455.2
length 5740
RNA type mRNA
GC content 0.39
exon number 15
gene id LOC113527532
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15993019 ~ 16010839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCGACACAAATACAGCTCTCCTCAGGATATCTGAGCATCCCTATAAAACAATTCAGtggaaatgtttaatatcttttaATAGCTTGTTTTCCTACGGAGATCACACTGAGACCAGGGACCTCTGATGGCGAGACCGCAGCCTCTGAATAAGCCCCGCCTCAGCCAGGCGCAAATGCATCTTCAAATAGACGCACGTGTTATGCCGCTCTCGCAAGCTTGACTATGAACTAACTCGAGGTCAGagcagaaaagagagacaggctgTTCATGCGACTATACCAGATCAATTCAGCTGTTATTTCAGCTTTTTCATGCCCAGCCAGACTCGTCCAGCAGTGGCTTCTTCAACTTCTGTACAACTGCTTCCATCAGGCAGATGAGAACAAAGCACTCAGTCATGGTTGTATTGAGAAGGCAATTTGACTTTGAGTCAAACCACCTGGAGGAGGAGAACCAAACATGCAGTGTATTTTGGATTGTGTGCAATATTTTGCAGATGAAAGCTGCTGAACTGATCCACAAGGTGTAAACTGAgtcaaaggacagagctgtagcactgcagaaatgtgatgtgttctggatatttgggccagcaaacaaaaagagaatATAAACAATGGATacaaaatgcaacattttttaaactagttatttatacaATGATCTAGTAATTTTtttgagtggcagttctgtgttctccatgctcAGGTGATTCTTCTTACCTCTATGTGCAAAGGCAAATATTTGATTACCTTTTTTCTATCACCATGTTTCtgataaatgaaagaattttacaaatatgtttttagaAGCACACACCCTCAGCCtgtgtatttttcctttttttggttcatttaattatgtgcagtgtgaaaccaaaccaaaaccaaTAGCATCCAAACCAAAAGTATACATTCCTGCAATGTTGTGCTGATTCTCCTGTTGGTTtctcttgtgtatgtgtgtaggtattttttgttttgtgctaGCATGTATATTCTGCAACAGTATTTAGAGAGTGCAACTGAGTGGGTCATTACAGAGAGGGAAACATTAGAAAATGGTCTGGTGATAGTGAATAGTTAAGGCAGactatgtttaatagtgttCTCATGATTCTGCTAGTTAAAGGAATGCCAGTAGTAATGTTCCTAAATATACCATTTTGTTTCCAAAGATACAACCAATTTAAATGGAAGCTTGGTGTAATTAAGTGTTAAAATATTGTGTGGCTGTAAGCCAAGAAAATTATCTAGACCCACAATTACGAGATATTTGTATGTTGCATATCAGTGGAACACATAAGGTATAACACAGATTATTACACATTGTCAAGGTTTTGTTTGAAATGAAACCTATGAAACcttatttaaaacagaaatctgttaataaataatatacagtttggctatgaatgaattattaacaaattGCACTGAGTGCTGAAGTTCAAGAAGAAGCAGTCTATTTGACCTATAAAAGATGTTTAAGGAGTTGGACAAGCTGACCTCTGGCTTTATGATTGTCTCCATAATCTATATTAAAATTACCACAATATAAAAAGCAAAGGTCATATTGCTGTGCATTTTGCAGagctataaaaaaaaccttatgcacatcaaattctgtACTGTTTTCTTGCTGAATTTGTCATCTGTAGCCCTGCACTAATGTGGCAAATATTTGGATCGGAGTCTAAAATACTGGCTGCTACTCCAACCACATACTGCTAAAGCAGGGTGTAATTTGGTCGGCAGGCAATCTGTGTCATTGAATAGACTCTTTACATAAAACAgcattacttaaaaaacatttaaatgtagtATCAAAGACTTTTCTTAGAAAACCTAAGAAAAAATCTGATGAATGCTTTCTTATATAAAGCTGTACACAGGGACAGTGTAGGGAGCTGCTTATAAAGACAAAGGTTTGTTCATGGTTTAATTCGCATCATCCGCTGAAGTCTTCAAACATCGCTCAAGTTAATATTAACTTTTGAGGAGTTTCagcagtggtttttttttcttaaaggtaACTCAACAGCTAAAAGGCTTAACTCCACCTAAGAAGCATGAAATGATTGCAACCTGAGAGAGTTCAGTCACTGGGGATTCTCTTTCctctattttgttttaatttatatgCTTGTGTAGCCATAACAATGGAGATATCTAATGTTTTACCTTCTTTCAGAGATATGGAGATGAATTATGATCCAGAGGTGCAGTTAAAATTGTCTTGTCCAGAATCAGGAGTTAATAGAAAGAGCAAAACTCAAGAGAGAGGCCAGTGGTCAAATAAGGTTGAATTTCTCCTGGCTGTCGCTGGGCAAATCATCGGTCTAGGAAATGTGTGGAGGTTCCCATACCTGTGCTACAAGAATGGAGGCGGAGTGTTTTTCATTCCATATTTGGTCTTCCTGTTTGCTTGTGGCATTCCACTGTTCCTCATGGAGATATCATTGGGTCAGTACACCAGTCAGGGTAGCATCACCTGCTGGAGGAAAATCTGCCCCTTGTTTGAAGgATTGGGCTATGGTACTCAAGTGGTCGTGTTGTACTCCAGCATCTACTACATCATCATTTTGGCCTGGGCATTCTTctatcttttttcttcctttagtGCTGAGGTGCCATGGGCTACCTGCAGCAATACCTGGAATACcgaaACATGCACTGAATTTGACAAAATGGACGATTTATGCAACTCGAGTATACCAGAGAATGCAACTTCACCTGTCAAAGAGTTCTGGGAGAGGAGAGTGCTAAATCTCACAGGTAGTGTGTATGAGCTGGGCAATGTGAGGTGGGAGCTGGCTCTGTGTCTCCTCTTGGCTTGGATCATCTGCTACTTCTGTGTGTGGAAGGGAGTGAAGTCTACAGGCAAGGTGGTCTATTTCACTGCTACCTTTCCTTATGTAATATTGGCAGTGCTTTTGGTACGTGGACTCACGTTGCCTGGGGCTGTCGATGGCATCATTTTTTACCTCTACCCAGATCCTACACGCCTCACAGACCCACAGGTGTGGATGGATGCTGGAACGCAGATTTTTTACTCCTACGCTCTCTGCATTGGGTGCCTCACTGCTCTGGGAAGCTACAACAAGTACAATAATAACTGCTACAAGGACTGTATTTATCTGTGCCTGTTGAACAGTGGAACCAGTTTTGTGGCTGGATTTGCCATCTTCTCTGTGCTGGGCTTTATGGCCTATGAGCAGAAGACAGACATCTCAACAGTGGCAGAGTCAGGTCCAGGCTTGGCCTTCATTGCATACCCCCGGGCAGTTGCAATGATGCCTGTTCCACAACTATGGGCCATTTGTTTCTTCATTATGATTATTCTGCTAGGACTGGACAGTGAGTTTGTATGTTTGGAGGCACTGATGACTGCTGTAACTGACATGTACCCCTCATTCTTCCTCTTTGGTCATCGTCGCAAAGGATTCCTGCTCATCATTTGTTCTGGGTGTTTCCTGATTGGCCTGGTTATGGTAACGGAGGGCGGCTTGTATATTTTCCAGTTGTTTGATTACTATTGCTGCAGTGGGATGACACTTCTGTTATTCGCCATTCTGCAGTCAGTGTGTATAGGGTGGGTGTATGGTGCTGATCGTCTTTATGATAATATTGAGGACATGATTGGATATAAGCCACTGTTCTTAATAAAGTATTGTTGGAAGTACCTCACCCCTCTATTCTGCGCTggTACATTTGTCTTCTCTCTGATCAAATTCACTCCTCTGAAGTATAACAATGTTATTGAATACCCCTGGTGGGGCTACGCTATTGGTTGGTGGTTCACACTCTCTTCAACTCTGTTGGTTCCTCTTTGGATGATCTATGTGCTGCTCACTTCCAGTGGCTCGCTGAGACAGAGACTACGTGCTCTCTGCACCCCAGCAAGTGACCTTAGGTAAACACTTTGCAACTGGAAGCTATGGAGGACTTCTTGCCCTATTGCAACAGCAAGGACGTCCCTGAATCACAAAGGGCAATAATAAAGTCGACcatgcatattttaaaaatgcacttttATATTGGCCTTTGGCCTCTCCTCAAATGGACATGCTGTGAAGTTGGTGTATATACGCACAATTGTAACTATCAGTCtgtaaaatgaaacatgaaTTGTAGACAAATCACTAATAACAAAACCTATGCTCTGTAACAGTTCAGAGCTCTTTAATAACCTACTCAGTTATAGaaatgcaaatagcaatatTACTGAGATTCAAAGTGCCTTTTAGGGAATCTGTATAACCAGATTACAAAGAGCAGAACTTCTTTAGTAATATATCAACCATTCCAGACAGATTTTATGCAGCGATTTCACAAGAGAATTCCAGCCATATTTGGCATTTTTGGTGCTTGCTAATCTTTACTGAGAATGTGTTTTCTCATATAAAGATTCAAATTCAGAAGTTGTGTTACCTCATTATTGTACGGTTTCTAGTTCCTACGTTTTGGGTCATAATTGAAAAATGTTGATTGTCTATCTAAAAAATTATAGAACACCACAGCTATTCATGTTATGAACTGAGAACTGAGTATGACTGAATAACTATATAATACAGTGTATTGATATGCAAACTTTCCATTGTTACTTAATCAGAAGGCTGGATGTGATTTAGAAACACTGTGAAACTTTGAAAACAATGCAGATGATGAAACTTCTGAACCTAATTTCACAAAATAACACCAAATCATTTTGGAACTATAGTTTACAGTACACAAAGAGGTAAGCGTAGAAATCAGTGGCCCATTGAGGAAAGCTCAAACTGCTCCACCAAATCCACCTCCTAAATTGTGTGAACTGtatgactcttttttttaatattgtttttaatggCACACTAACAAATTTTAGGCAGCACTGTTTGATGTTAGACAGTGACAAGTGAACTGATTGGAGTAGCGTTTTTATTATAACACTACTAGCACTGTCTTTGACATTAAAGAATGCCTGATAGGTGTTTTTCATTAAAGTTAACTGGGgacaaaaatctaaaatcattaaaaagtaaaataagctTGGTTATTGGTTGAATTGTGTGATTGACTAGTGTTGCTAAAATTGTGCTTGCACAGCACAGGGAGAATTGTACCAGCAGTCCCAGTGGCCAGTCCGTCTCTGTGAAGTAATTCAGTGCAACCCTCAAAAACTCATATATGCAGTTGAATGTAATTTGTAatatgtactttgtaaatgtctTTGCTCGTATAGAATTGTGAGAAGTCTAGCTAGGTGTTGATTGTTGCCCATTGGAAATTTCACTAGTACACATCCTTGGAGCACCTCAAAAAGCACATGAGAAATGTGACACAATGTGGCCAGTGTGATTCATCACAATGCAGTCTAACTGGAACGATGATGCTTCTatgctaaaatatatttatattattttatatatatataatgactatgtggaattatttttgaaacattAAATCTTAGAGATGTTTTGAAAAAATAGGTTTTTGAAAATAAGTATTTGTTGTAAATTGTGATGTACATGATTGCTAAAATATCCGATATCAATGACAAATGTTTAGATTTCCATTTAGTATTTGGCAGATTTTGTGTAATGATGGTTATTATGCTATTTACTTTATTGTGCTGTATTGTATTATAGAGTTTTGTATTGATCTAAATTATAGGTGCATTACACTGTCCTTAATGTAGTAAGATGTACATAGTAACACTGTTATGTAATTAAAGGTACTGTTTTTCTCCAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579697.1 lncRNA upstream 32149 15943362 ~ 15960870 (+) True LOC117599231
XR_003403691.1 lncRNA upstream 84965 15896428 ~ 15908054 (+) True LOC113536643
XR_004579681.1 lncRNA upstream 155633 15834478 ~ 15837386 (+) True LOC117599223
TU33049 lncRNA upstream 202575 15788651 ~ 15790444 (+) False LOC113534559
TU33047 lncRNA upstream 214419 15776898 ~ 15778600 (+) True G28041
TU33146 lncRNA downstream 2508 16013347 ~ 16014109 (+) True G28132
XR_004577052.1 lncRNA downstream 18295 16029134 ~ 16032135 (+) True LOC113533806
XR_003403456.2 lncRNA downstream 18295 16029134 ~ 16032135 (+) False LOC113533806
TU33168 lncRNA downstream 62383 16073222 ~ 16076550 (+) True G28150
TU33170 lncRNA downstream 72450 16083289 ~ 16084968 (+) False slc2a11a
XM_026923932.2 mRNA upstream 101205 15887173 ~ 15891814 (+) True LOC113532530
XM_026927452.2 mRNA upstream 202580 15788626 ~ 15790439 (+) True LOC113534559
XM_026936877.2 mRNA upstream 243526 15734844 ~ 15749493 (+) True hemk1
XM_026924038.2 mRNA upstream 532017 15456646 ~ 15461002 (+) True cav3
XM_026919013.2 mRNA upstream 539892 15451434 ~ 15453127 (+) True LOC113529636
XM_034300857.1 mRNA downstream 24614 16035453 ~ 16048798 (+) False rab44
XM_034300866.1 mRNA downstream 24614 16035453 ~ 16048798 (+) False rab44
XM_034300849.1 mRNA downstream 24615 16035454 ~ 16048798 (+) True rab44
XM_034300871.1 mRNA downstream 24615 16035454 ~ 16048798 (+) False rab44
XM_026934989.2 mRNA downstream 52285 16063124 ~ 16066779 (+) True trub2
XR_004580083.1 other upstream 698665 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 801363 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2491723 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2493654 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 170479 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2763931 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2806563 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3523602 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4099291 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile