RNA id: XM_026915510.2


Basic Information

Item Value
RNA id XM_026915510.2
length 2748
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113527565
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16317108 ~ 16320572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGCTTAGTCAtagaaaaatgatatgaaagtGCTTTGTCACTCTTATAGTGCAGGATGTTaataccagtgtgtgtgtgagcacagcCCGCTGTTTGTATTGTCTGCCTTATCAGTTCCTGAAagtccttccttctttcttgcTTCGCACCTGTTTGGCTTGACGTCTGCAATGGAATTGAGGTTACTGAATAATAGGAAGGTAAGGAGGCAGGTAGGGCAAAATTTCTCTTAGTGGAGAGGCAGAAATAATAATAGCTTCACAGTCCTGTTCATGTCAGATGTGCACACAGTGGCTAAAGTATAGAAACAAAATAGTGGACAGAAGGAGTACGCTCGTCAGATGATTTTATACAGTGAGACGGAGCTGTTTGGCCaattgtgaaacaaaacaagtctACGGAATTTGTTCCAAGGGAACTGGCACAGAAAGAATTACACAACGTTTACTAATCTCTAACGGTTCCTTACACATTTGTACAGAAGACAGCAAGATGCAGGAACCTGAGGTATTACCAACAACAACGTCCAATGCAACCTCGGACATACCCGAGACAGTTCTTCCTAAAGAAGAGGACCAAGTCTGGGATGCAGCTCCAGAATGTTCCATTTGCTTCACCTCATATGATAACACCTTTAAGACACCTAAAGTTCTGCAGTGCAATCACACATTCTGTCTGGAGTGCCTGTCTCGCTTTTTAGCTGTTTCACCAGATCAGAAAGGCAAACAGATTAACTGCCCCCTTTGCAGACAACCAACTTCTGTGCCTGAAAATGGTCCACCAGCCCTGACCACCAGCCAGGAGGTTCTGGGGCAACTGCCCAGCCACCAGCAGCAAGAGGAACATGTATGGCTAGATGGAGAGAGGCTCTGCTACTCAAATCCAGGGACACCCAATGGTGTCTGCATCGACATTGGGGGTAGCAAGCAACAGAATGAGAACAGACAGGAGGAAGCAGAGAATAATAGGAACAGACGGGGGAATTGCATGGGTCTGTTCAAAAGGTGGCAGCGAATACTAATCTTCCTATTGGTGATGATCATACTGATCATCATAGTCATCTGGCCCATCCAGTGCGTCTTCAGCCGGGGTTTGACATCAGGCTGCTTCAGGCAGGACGAGCCCTTGCCGATCGTCCCTACAGCTTCAACCAGCACAGATAGGTGAATGTTTCCAGGACTTAGTTCTTCTGGTGAACCTGCAGTGAGCTTGACTTTCGGATTTAAATGCAAACTTACTCAGGAATATTCAAAGACAGTGTCATAGTCATGTAATGATTGCAATCCCAGTCTTCCACAATAATGGAGATTGCTACATCCTGGACATTATGTACTCTGCCATACAGCTTAAGCTGAAGTTTTTGGGAGTTTCATCTATATTTTTCATTGCAGTCTGAAAAATAGAAGATTAATATTGCTGCTAAAATCAATTGAGCCAAAaaatcaacacaacacaaattGTTATCGTTAGATGAGGAGTGCTTTGGTTGAAACCTTAAATTAGTTTGTCTTTCTGGTCTAGTTATGACAAAACCTCAGTCATTTGAAGTTGATAGCTTTGCTGCTGGAAATCAATATTATAATTCAGATTTTGGACaaatttggaaaataaaaatacaggtACAGTAAATGTTGCtatatgtattataatgtacagtacacatacacaaaaatgtCCTTTTTGCTTTGGATTGTACTAGAGGTGTTATGAGCATTACTATCCATTTCACTGTACTTTAAgtatgacttaaaaaaaaaattaaaaataaaaattaattaaatagctACCCCCATGGAAAGGTGTACATAAAAGCAGCACATATATTCACTATTTTGAAATGAAGACAGTAAGACGGTATTCCTAGGAATGTATCTGTATTATACGCTCTACATTAtggtttatatttacagcatttatccAGAATGACTTACAgcagtgctttgtagtctccatGGAAAACACCCTCATGCTAGTGCAAATAGGCCACTGTGTAAGAATATTAATCTAAGACCATGTAACTGAGAAAGTATAGTACATAGTATAGGATCTAGTGTTTTTTACAGTAGTAATTTTATTGCTAAAGTTGCAGGTTAATGCTTTTATTCAGTCACTCAGCCCTTCATTCAAGGAGGAGGAATGTATTCCATCACTTTAGTGCCAATACGAAAAAAGAGTCTTGATTTTTGTGACTTCCTTGTATTTTGAGGGATGGTGGGTCAAGATGAGCCATGCTTCAAGTCATATGTTTGAATTATATGTTACTAAGAAGTATCTTCCAGATTTAAGAACAAATACTACTGTACGCTAACCCAAGGGTACATTACTGATAGGTCATGtgattttattaaatcacaatATTTTGCCTCCTGGTGTGCTCCTCCCACAATCCATGATTTCTCCATTTTCTAAAAGaaacatgctatatataaacaaaagctACCTGCCTAATTATATACTTAAATGATGTGTTAGGTAATATTACCTATCAGGGTATGTCACTgctttacaaatatttatgaacGGTTAGCATGTGGAAATGTAAATGCTCCAGGTTGTGTTATGTATGTACTAAAATGTTGACAGTGTTGTAAAGATGGAGGCCCTATGCTACATAGAAATATgttgctatatatatattaacattacTCTCAGTTTTGTTATTGACTATAATGCCAGTTCCAAGTTTTCTTTGAATTTGAATCATCAAggaaataaaaccataaaaatatGATTCCTGTGAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33449 lncRNA upstream 47556 16268709 ~ 16269552 (+) True G28361
TU33361 lncRNA upstream 161864 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 193968 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 194776 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 210836 16106043 ~ 16106272 (+) True G28156
TU33490 lncRNA downstream 12879 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 15620 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 25073 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 37510 16358082 ~ 16361347 (+) True G28410
TU33523 lncRNA downstream 77673 16398245 ~ 16401066 (+) True tomm6
XM_026931267.2 mRNA upstream 3864 16306061 ~ 16313244 (+) False c2h1orf159
XM_034310280.1 mRNA upstream 3864 16306103 ~ 16313244 (+) False c2h1orf159
XM_026931429.2 mRNA upstream 3864 16306140 ~ 16313244 (+) True c2h1orf159
XM_026927266.2 mRNA upstream 14652 16301268 ~ 16302456 (+) True akap14
XM_026928817.2 mRNA upstream 28466 16283953 ~ 16288642 (+) True kbtbd12
XM_026915498.2 mRNA downstream 428 16321000 ~ 16328152 (+) True si:ch211-157b11.14
XM_026924529.2 mRNA downstream 43099 16363671 ~ 16365937 (+) True ppil1
XM_026938484.2 mRNA downstream 70840 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA downstream 70843 16391415 ~ 16394007 (+) False tspo
XM_026938693.2 mRNA downstream 77837 16398409 ~ 16401099 (+) False tomm6
TU33403 other upstream 134805 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1022754 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1125452 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2815812 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2817743 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2454198 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2496830 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3213869 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3789558 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4694286 21014858 ~ 21017447 (+) False insl5a

Expression Profile