Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916171.2 |
| length | 1105 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | LOC113527941 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16227005 ~ 16230782 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0005770 | late endosome | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33361 | lncRNA | upstream | 71761 | 16154986 ~ 16155244 (+) | True | G28287 |
| TU33182 | lncRNA | upstream | 103865 | 16122896 ~ 16123140 (+) | True | G28162 |
| TU33180 | lncRNA | upstream | 104673 | 16121977 ~ 16122332 (+) | True | G28160 |
| TU33176 | lncRNA | upstream | 120733 | 16106043 ~ 16106272 (+) | True | G28156 |
| TU33170 | lncRNA | upstream | 142037 | 16083289 ~ 16084968 (+) | False | slc2a11a |
| TU33449 | lncRNA | downstream | 37929 | 16268709 ~ 16269552 (+) | True | G28361 |
| TU33490 | lncRNA | downstream | 102671 | 16333451 ~ 16334652 (+) | True | G28402 |
| TU33492 | lncRNA | downstream | 105412 | 16336192 ~ 16336694 (+) | True | G28404 |
| TU33493 | lncRNA | downstream | 114865 | 16345645 ~ 16346086 (+) | True | G28405 |
| TU33501 | lncRNA | downstream | 127302 | 16358082 ~ 16361347 (+) | True | G28410 |
| XM_026930160.2 | mRNA | upstream | 31745 | 16188335 ~ 16195260 (+) | True | eefsec |
| XM_026925678.2 | mRNA | upstream | 44696 | 16181171 ~ 16182309 (+) | True | mustn1a |
| XM_026931590.2 | mRNA | upstream | 46871 | 16175199 ~ 16180134 (+) | True | rft1 |
| XM_026936003.2 | mRNA | upstream | 55781 | 16166729 ~ 16171224 (+) | True | sirt4 |
| XM_026925394.2 | mRNA | upstream | 60974 | 16157525 ~ 16166031 (+) | True | zgc:172271 |
| XM_026919974.2 | mRNA | downstream | 1112 | 16231892 ~ 16233338 (+) | True | LOC113530143 |
| XM_026929639.2 | mRNA | downstream | 3245 | 16234025 ~ 16239942 (+) | True | arpc4 |
| XM_026924135.2 | mRNA | downstream | 14527 | 16245307 ~ 16258431 (+) | True | myhb |
| XM_026924123.2 | mRNA | downstream | 28652 | 16259432 ~ 16268579 (+) | True | p4htm |
| XM_026928817.2 | mRNA | downstream | 53173 | 16283953 ~ 16288642 (+) | True | kbtbd12 |
| TU33403 | other | upstream | 44702 | 16181318 ~ 16182303 (+) | False | mustn1a |
| XR_004580083.1 | other | upstream | 932651 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 1035349 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 2725709 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577013.1 | other | upstream | 2727640 | 13496154 ~ 13499365 (+) | False | tshba |
| TU34871 | other | downstream | 2543990 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 2586622 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 3303661 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 3879350 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU36319 | other | downstream | 4784078 | 21014858 ~ 21017447 (+) | False | insl5a |
