RNA id: XM_026916183.2


Basic Information

Item Value
RNA id XM_026916183.2
length 4672
RNA type mRNA
GC content 0.45
exon number 5
gene id patz1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16106829 ~ 16119848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATAAAGGGGAGGAGGGGGTTAGAAACCAGGAAGATGAACAATATGCAGAATTCACGAACATGAAAACTGCAATCAGTGAACACAGCTGACATGTGAGCGCGGTTTAGACGCGTTCAGCCTGACTGTCATTATCAATAAGCGATCCGTTTTCCCGAAATATATCAACTAAAACACGGGCGACACCCCCTCCCTCCAAAACAAAGGTCAAAGTTCACAGGAAGCTGGGGGGCTGCCATTTTTCCCCTGCTAACATGTTAGATGCTAAAACGAAGAGGGGTGGTCGTTGTTGAAAgcgtttttgtttatttttattttttttttaaccgcagggattatttttctctctgttcatGTTTGTTCGCCTCTCCGTCACATGCGCTAGTCGTTGTGGTTAATGGACGGCGGCATGGAGAGAACAGAACAGCCGTGGAATTCTTCCTATACGTACCAGGTGAGCAAGCACAGCGCCGAGATGCTCCACAACCTCAACAGCCAGAGGAAAGATGGAGGCAGATTCTGCGACGTGATCCTGCGCGTCGGAGAGGAGAGCTTCCCGGCGCACAAGGCGGTGCTGGCGGCGTGCAGCGAGTACTTCGAGTCGGTGTTCAGCTGTCAGGGCGAGGGCGACAGCGAGGGGAAAGAGCTCGAGATGCACACGATCAGCCCCAAAGTTTTCCGAGATATCCTGGACTTCGCGTACACGTCGAAGATCGTGGTGCGCTTGGAGTGCTTCCCGGAGCTCATGACGGCCGCCAAGTTCCTGCTCATGCGCTCTGTCATTGAAATCTGCCAGGAGGTGATCAAACAGTCCAACGTGCAGATCCTGGTGCCGCCGTCCCGCGGTGGAGAGCTCAGCTTCCTGTCAAACGCCATGCACGCTGACGTGCCAAACGGCGCCGTGTTTACTAACAGACACAGCCTCGACGGCGACAGTAGCAGCGCTCCTCCACCTGTGAACAGCAGCTCGCACCCGATCGGCCTCTCTGTGCCCCCTTCAGCCTTCACCACCAGCCCGGTAAACGGCGAGGCCTCTCCAACCTCCAAGCGAGCCAGAGGACGGCCCAAGAAAGAAGATCCGCCAGCGCCCGGCGTGTACAACAACGGTACGACTGACGACAGTGAAGGTGCGTTTCCTGGCGGCGTTTGCGCTAAAGTGCTGAGCGACGCTGTGCAGCTGAGAGCCCATGAGGCCCAGCACGGGGCTGTGGGCGCAGCTGGAGAGTTAGTGTCCGTGGATATGGCTGTAACGGCTCCTCAGACTCAGAACTGCGTGCAGACGGACGGGAACCGCAAACGGGAGAGGACGAGACGACACGTGGGCTGTGATCTGTGCGGGAAGGTGTTTCGAGACGTCTATCACCTCAATCGACACAAGTTGTCTCACTCCGGGGAGAAGCCATACGCGTGTCCTGTGTGCGGCCTGCGGTTCAAGCGCAAAGACAGGATGTCTTACCATGTGCGCTCTCACGATGGAGCCGTGGGCAAACCGTACGTGTGCCAGAACTGCGGAAAAGGCTTCTCCAGGCCGGACCACCTAAATGGCCACATCAAGCAGGTGCACACCACAGAGAGACCTCATAAATGTCAgATTTGTAATGCGTCATTTGCAACACGAGATCGTCTGAGGTCTCACCTGGCCTGCCACGAGGATAAAATCCCATGCCAAGTGTGCGGCAAGTTCTTAAGGGCTGCTTATATGACAGACCACCTGAAAAAACACAGCGAAGGACCTCATAACTACTGCAGCATATGCAATAAAGGTTTTTCCACTGCGTCCTACCTAAAGGTACATGTAAAAACACACCACGGCTCGTCCATGCTCCCTTCCTCCACAGCTCACCAGTTCCTTGAGCCACGTGACAACGGGCCGCAGATGCACAACGGCGCCCCCTACCACTCAGGACGCCAATGCGCAGTGGAAGACGGGCAGGAAAATGCTGCAAAATGCCCCCATCAGGATTCTGAGGGGTCGGAAGCTGCATTCGGGGACCTTTCTAATGGAACGGAGCTCAAACTGGAGCATAAGGCTGAGGACAAGGAGCTTGAGGTAACCTCGCTGATCTTTAACGGCGAGGCTGACGGCACAGCAAACACGCCATGCGGCTCCAAACAGAAGACAGACATAGAGAAGAAGTTTGCTTGTGGCTTATGTGGCCAGACCTTCCGCACTAAATCCTACCTCAACAAGCACCAGCACCGGGTGCACAAGAAACCCAGTGGGACATCAGCCAGTCTCGGGGATCTGGGTTCTCCGTTCTCGCCACAGCAGAACATGTCGCTGCTCGAGTCATTTGGTTTCCAGATTGTCCAGTCAGCTTTTGCCTCATCACTCGTGGACTCTGAGGTAGGGGGCAATGCTGTAGGCTTAGGGGACAAGTGAACACTTGGAGAAAGGGAGACATTTGCTCTTACCAGATGTCCACAGCTTTGAGGGAACTGCAGTTCTACCTTTTATCATCAATGACATTGTAAACTATTGTCTTTTGTGTTGCTTACTGTCAACCTTTAGTTAGTTGATTTAATGTTTTGACTTGCAAATTTGCCAGTATGTTTTCCATTCTTGTTGACATGAAGCAATCAAGCATTCAAAATCAGAGTATGTATTAATAATCATCCCACAGAGCCTATTAAACCCAAGTTGAACTCCTTCGGATCATTTTGTGTGGATGCAGGTAACAAAATCCTGGGCACAGACATCACTGGAAGCCCTAGGCTCTGAAATTGTTTTAAGTTAAATAATGATGACTAATTTAAATCTTGTTCCCAAATTCATGGTTGTTaacaccattttcttttcatttcattctgaaTCATGAATATTTGCAAGATGGATTGTATAGATTCAGGCAAACCACATACGAGTTTTGAATATTTAACAGGGACCAATTTCAGGTATGACTGTAAGATATTACAAGAGATGAAGAGTatattttattaacttattGATTTTGGTGTCCCATCTCCTTTATGAAATGGTTTATAAGTCGTTGGTAAACTTTAGATCTGTGCTGTGCTATTTTGTCTTTGAATTATGCGTTTTAGAGGCCAAGAAgaatttctgtgtgtatgtgtgtgtgtgtgtgtgtgcacctgcgTGTGTGcctgcgtgtgtgcgcgtgcacacATCACGGTCTCTTATTAAGAGAATGTAATGTAATCAGAGGGCTTTTTAAGGTTTTTTAATATATCAGGACTTTTTTCTATGAGGGTCCAAACATTCCTGCTTAACTTAAGAATTCCTATTCatgatgtgtatataatgttcacatatgtaagaaatatatgtatatataaatacttataTATGGCCAATATTAAGTTTATTCTATGTAACGGGGCTCTGTGTATTTAACTTCCCTTGGCCATTATGGTTGAATAGAAGCTTGAGTGGAGAAATATGTTTTGAGGCAAAGAGCCTAGGTATTCAGTTGGTTTGAGTAAATTCACATTTGTATCTCTTATAACGCAGTAGTGGTGTGTGATCATATAAACTTTTTTGTGGCATGAATACGCCATCAGTGTGTCAGATCTAAattcctgttgttttttttcttcttttttttttttaaatttaattttgagCCTTTAGACTAACAATAAGTACTCTGAGCAAATGTGACTGGGCAGTGATTATGATatcaaaaaagtgttttaagaGATATGCCTGTAAGAGGCCTGCTTTATGTGCTTACACTCGTAGGAAAAATTAGAACTTTTAAGGGTTGTCTGTGGAAAAACCTtaaactttaaatgttttatgtagaGCCCTACAACAGAACATTTCCTCTATCAGACCAGGTTCAAAGTAGAACATTGTGGAAGCCAAGAACTTATTATACAGTGAACTCTTGGAAAAGCCTGTTTTTCTAAGTGTGTATGAGAGCTCTGGTGTATTTACTTGTTGGAGTGAAGGTTTCAAAGGTCATGCGAGTATGAATTAGCAGTTGATTCTATTTTccgtttatttattattgttatgcaAGACgtgtttaaaagttattttcagCCCGCATTAGCTTGGAACTGTCTAAGATTTTTCATGTTAGCTCTGttgtatttatacatattagTCATTCATTTCCTtctaatttatgtttaaaattcaTCCTTATTGTCCTCAAGTGTGACGAGAGGAAGTATGCAACTAACCAGGACTCCCTTCATGACAGCATTGTTTGACTCCTCTAACTGACCCAACAAATCCATCTGATTGTTTCTGTCAAACTCGGCTTCACCTCACTGCCTGGAATTAACCACCCCTGCACTCTAATCGGTGCCTGTATTTATGTGAAAGATTGATGTGATCGTTTGGGAAGGTTCTGTGATTAAAATACTGATATGCCGTCTCTTATGTTTTAGTGGCACATTGTATCactggaaatgttttttaaacattgttttatttgtattctgCTTATGTTTTCATATAACCGTATGTTGCAAAGTGCCTTCCCAGTACTGATTGTGAATGGGTAGGAAAATCTGTCATTAAAAGGACCATCTTAAGAATAACCATGTACATAAAGTGATTTGCATTGACACTTTTGTATAAGGACATGCACatagaaagaaaatgtacatttgtatgtatgtttgttattCTATCTTTGttctctgataaaaaaaaaaaaaggtttctttgCAATTTCAGTCAAGAATTTCATTGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33314 lncRNA downstream 61154 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA downstream 67036 16037983 ~ 16039793 (-) True G28258
TU33280 lncRNA downstream 172971 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 318676 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 381373 15720767 ~ 15725456 (-) True G28191
TU33349 lncRNA upstream 2881 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 6056 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 6078 16125926 ~ 16126299 (-) False eif4enif1
TU33409 lncRNA upstream 61227 16181075 ~ 16181718 (-) True G28325
TU33415 lncRNA upstream 76726 16196574 ~ 16196867 (-) True G28331
XM_026924815.2 mRNA downstream 23051 16074046 ~ 16083778 (-) False tgfa
XM_026924805.2 mRNA downstream 23053 16074046 ~ 16083776 (-) True tgfa
XM_034300875.1 mRNA downstream 50142 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA downstream 50149 16047993 ~ 16056680 (-) True entpd8
XM_026913026.2 mRNA downstream 82360 16011998 ~ 16024469 (-) True fkbp5
XM_026921753.2 mRNA upstream 5982 16125830 ~ 16135715 (-) False eif4enif1
XM_034297701.1 mRNA upstream 5982 16125830 ~ 16135689 (-) False eif4enif1
XM_034297700.1 mRNA upstream 5982 16125830 ~ 16135689 (-) False eif4enif1
XM_034297709.1 mRNA upstream 5982 16125830 ~ 16135688 (-) False eif4enif1
XM_026921745.2 mRNA upstream 5982 16125830 ~ 16135688 (-) True eif4enif1
TU32920 other downstream 637600 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 645828 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 807810 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1230839 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1153107 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1393864 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1829309 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1951139 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2457376 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile