RNA id: XM_026916723.2


Basic Information

Item Value
RNA id XM_026916723.2
length 4984
RNA type mRNA
GC content 0.44
exon number 19
gene id mtmr14
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13912064 ~ 13930791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGAAGTGCCGATCACGTGAGCGCGTCAGTTTCCTGTTTACTACTCGCTGCCATTCTCTGTCTGCCACTCGGATTGCAACACTCTGAACGACTGGATTTTACTGTAGGAGCCCAAAATTACTTCGCTGTTGTGCTTTTTGCAGCAGTGACAATTCTGCCATGGTAAACTCATTTGAATAGCCTCGCAACATTTagtttttaactgaaaaatgaaGACGTGACATTGAAGAACGTGACTAGGCCGGGAGTCCTCTGTGTTTCCTGAGCGACGTGTCTGTTATTCGGTCGGCTTGAGGTCTGGATGTTGTGACTGAGAGAGTATGACACTGGTCAGTGGACCAGAAGCGTCGTGCACAAGCAAAGCCGCTGTCTTCTGTCGTGAACGGACAAATCTGACAGTTTGCTAGCTTTGCCTTTGCCGGACTGTTTACGTGTTGTTGTAAAGCGAGCCTGTGGAAGGTAGCTAGGTTGTGTAGCTTCGTGTTTGTGTTATTGGGTCCTGTCACTGAGAGTGAGTGGTTAGCTAGCTCGCTCGGCTAGTTAACGGACCAGTAGCGTAGAGGAGGGTTCAGCTCGCCGGTACCCTGAACTCTCGACGTCTCCCCGGCTCCGGCCCCCTGAAGCGGGCGGTGAGGAAGAAGCTGGCCGGGAAGGGATGGCCTGGAGGCAGCTCCCGGCCTCACGGAGCGGCGCTGTTTGAGGGAGGTCGAGTTCGCATCGAGCACGAAGCGACGGGCCGCGGCGCGGTGATGGCCACCGGCAGCCTGAGTGCTTCTGGGGCAACGGCGCGGAAGAGCGAGGACATAGCAGATCTGATCGACCTGTTTTCCAAGACTCAGTACAGAGCAAAGGAGGTTACCCCACGGGTGGAGAGAATAGAGAAGCGATGCCTGGAACTGTTCGGCCGTGACTACAAGTACTGCGTGATCCAGAACAGCAATGGCGAGGTGTGCGGCCACTACCCTCGCCACATTGTCTACTTGGAGTACGAGTGCACTGAGCCCAATAAAGAAAGTTTTGAGAGTACAGTGCAAATCAACAAGTTGCAGGATTTGGTGAACCGCAGTAAGATGGCCCGTTGTAGAGGGAGATTCGTCTGTCCAGTCATCCTCTACAATGGCAAGCATGTGTGCCGGTCATCCACGCTGGCAGGCTGGGGGGAATTATATGGACGCACTGGCTACAACTACATCTTCTCAGgggGCTCTGATGACACATGGGCAGAATCAGAAGAAGTCCCAGAGGATGATTCTGCTGTCCGGAATGGAGATTCACAGCTGTTTGATAAAGTGAGGGGTTCAGACATTAAGCTGCTGAAGTATCTGTCTGTGCGCTACATCTGTGACCTTATGGTGGAGAATAAGAAGGTCAAGTTTGGCCTCAATGTCACCTCCTCTGAGAAGGTAGACAAGGCCCAGCGTTATGCAGACTTCACCTTGCTCTCTGTGCCTTACCCAGGGTGTGAGTTCTTTAAGGACTACAAAGACAGAGACTACACAGCAGAGGGCCTGGTCTTCAACTGGAATCAGGACTTTGTGGATGCTCCCTTGACAATCCCTGCATGCTTTACAAAGAACCTGAACATTGACTGGAGTGAATATCAGTTATGGGACCTGGTGCAACAGACGCAGAATTATCTGAAGCTGCTTCTGCACATCATCAACAGTGATGatgAAAGTGGTTTGTTGGTGCACTGTATATCAGGGTGGGACAGAACTCCACTCTTTGTGTCACTACTCAGACTCTCACTGTGGGCTGATGGTGCTGTTCATGCAAGCCTGGAGCCAGCTGAGATACTGTATCTGACCATTGCCTATGACTGGTTCCTCTTTGGTCACATGCTGCCTGATCGTCTCTCTAAAGGAGAGGAAattttctttttttgcttcaatTTTTTGAAGCACATTGTGTCTGACAATTTCTCAGTCATGAAGAAACCGAGGAGGAAGAACTCTCAGTTCAAAGACACTGATTTCACAGTGGATGACCTCTGCCAGCTACAGTCCAGAGACAGGGGTAGTATGACCAGTTTGAGTAGtgatttttctttaatcactgAGGATACAGCTGCTCCCTCCAGTCTGTCTGCTGAGCCCGTGGACCTTATCTCTAGCGgAAGAAAAGCTATGACCTCGTCTCCTCAGACCGTGCTTTGGAACCGTTCAGTCCCATTTGAGGAGCGACTACCTCATCCACTTACAGAGGGCAGGTCCTCAAGCTCCTCGTCctccaaccaatcagagcagGGCTTTATCCGTACAGGCAGCAGCCCATTGGCTGTGCCGGGGAGAAGgTCCATGGTGGAGTATGCTCGTTCGGGGTCTTCTGTCTCTACAGAGTATGGTAGCTGGCAGATTGTCTCAGGCTGTGGGAGCATCCACGATGCAGCTCCTCTCCCTTTGGAGTCACCCCTTCCCTTCAGCTTCCAAGATGAGGGGCCCAGCGGCCGCATGTGTACATTTGTATCCGAGAGGCAGGCTCGGCTGGAGGCAGTAAGAGAGTTGTTCCTTGCGGCTTACAGCTCCACGGTGGGGCTGAAGTCCTCCTTTCCAAGTCCGTCTGGAGCCATCTCTGGTCTGCTGGAGCAGTTTGCTCGTGGTGTCGGCCTCCGAGGCACCAACACCATTGTCTGAACTCAACTTCCCCTTCTGTTCTGTCCTCTTTTCCTCAGTTATTTCTGACTCTCCATCTTGTGCTTTGTAGCAGTGAATCACCAAGAGAATGGTTCCTACTTCTGCTGGTCTCCTTAGTCTGacaatttatatcattttcatctcAGAGCCCTCCATTTGATGTGATTCATCATCCAGTGATCCAAGTGTCAAGTAGtccatatttataataatcccTCCAAAATCAGTGTTCCAAAAATCCTGAAGAACCACATTGCTCCTGTGCGTCATTACATGTCGTTTCCAAATAGATCTGTAAAACCCAACCCATCTGCTTCTTCTGTTCATTTCATTGCCCCTGTTTCCCTTCACTATGTGCACACCATTCCATCACGACTTAAATGTGCCAAACTTAAACCTTGGGgctactttttatttctttgtttgtttttaattgtttttacacCGAATTTGACTGTTGAGGCACCTCTAGTAAATTtctactttaattttttttttccatttatgtcCCTCATAGTTTcctcttttatatatattacatttatagtGAATGGCATGATGATTGAGAGCCTGAACACAACAAAGGGAAAAGGTTTCTTTTAACTCTTGCTGTAGCTGTATTGCTGCTACAAGAATATGTAGTAATGaacaaattctttaaaatgtaatttctatGTGGACCTCAAAGGCTGTGCTTCTTTTGGGGCATCAAACCTGTGAACATATTTTGTAAATTGTCTTTGAATTTAATTGTTAATGATGCCTCTTTTTGTCTTAAGATTCACTTAAACACTTGAATACATAAAGCATTATGATATGAAGTGTAAGTAACAAGTAAAAACTGCAGCATGTATGaatctggagagagagagagatgaccgTTTTCCTTCTGAACAGGAGGAGATTAAGGTTTTGTCAGTAATATAACAGTGTAGTTTTCAGATGTCTCTCTTTAAGCTATTTTAACAGCACAGTTTGTTTCATTTGCTAATGTTAAACGATGCTCTTACTCCTGGCTCTGTAATGCTTGTGTGTTCAGTTACacttcagcaaaaaaaagtaAGCAGGAGTTTTGGTGCACCTATCAAATAAGTTATAACATTGTATTTATGACATTTATGTATTTGCCTCCTGTTCACTGTTTGTGAATACAGAACTACTACTGGTTAGAATcacatcatttcctgtttggccCTTAAATCCATTGAATCTCCAAAACCATTTGCAGTAAAATGATTACATGGCACAGAAGTATTAACAGATGTTTGCTTTCATGTAATCTGTTATACCTCTTAGCTACTTTGTGGCCGAACCTGGCAGTGAAGTGTAACCACCACACCTTATATACAGTGCAGTCAGTTTCAGCTACTGAAGCTGTTTTGACAGATGATTTTGGTTATGGCAAGTGTTGCTATGATGCTTGGTGGTGATTGGATACATGttgaatataaaattaaagcagCACTTGAAATTTAGCATTTAACACTTGGGATTTATGTTCTTAATGCCAAATGGTTTTGATGGCCTTTTTTTACCTCAGGACCACCACGTGTTGTGCCTTTCTTTCTGTTAATATTGGGCTATATTTTAGATTACTTCTACATGGGAATTATGGTGTGtatcttttaaattttaaacacattatttttattacttcagAGTCTTCAGTCTAGCTACATTTGAATACGTTTTGGGATGGGAATGTTGCAGACTTGGCCATGATTTTGTTTCTTAAgacatactgtttttttccccccatattATTCAGTCAAACTTTAACTACATGACACAGACCTTTGGAATTGTCAATCTAAGAGCTTTAGAGTGTCTACAGTCACTCTGATcagcatggatttttttttatttttttgcccgCAATGTCCATCCAAATCGTATAGAACTGTTTTTTCATAGATTCCACATAAACATTTGTCAGGCTCATAAAAATAGACATCTGGCACTGAAAGTACTATAGCAAATTACTACAGCAATAGCAGTCAAGCACCTTGCAtgattttgcatgtttttcttttcattgctTGTTTTCTTTCACATGATCCACTATTTTCAGAATTCATTTTTCTCATGAAAAGTCCAGTTGAGTTACTTTTTAATTTGGGaatttaccttttaatgctaGTCTTTTccttaatcacattttaatgaaattttcatTTGCACTCATTCTGTCCTGTTTATAGAGAGTGGTGCACTCTTTGTCTTTGTACAGTGATTTTGTTCGTTTGTtcgttttaattttattgattccttaatatctcattatggTGGCTGAGGAGATATGGGACAGATGCTCTtccagtgaaaataaaagaagaaattaaaagtaa

Function

GO: NA

KEGG:

id description
K18086 MTMR14; myotubularin-related protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31741 lncRNA upstream 38541 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 75717 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 86838 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 282598 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 394661 13434904 ~ 13517403 (+) True G26749
TU31779 lncRNA downstream 70140 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 238989 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 539299 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 559989 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 565421 14496212 ~ 14496858 (+) True G27275
XM_034311769.1 mRNA upstream 47395 13836547 ~ 13864669 (+) False setd5
XM_034311755.1 mRNA upstream 47395 13836547 ~ 13864669 (+) False setd5
XM_034311750.1 mRNA upstream 47395 13836548 ~ 13864669 (+) True setd5
XM_034311762.1 mRNA upstream 47395 13836548 ~ 13864669 (+) False setd5
XM_034311759.1 mRNA upstream 47395 13836548 ~ 13864669 (+) False setd5
XM_034311785.1 mRNA downstream 349 13931140 ~ 14018732 (+) False LOC113533199
XM_026925269.2 mRNA downstream 349 13931140 ~ 14017600 (+) True LOC113533199
XM_034311792.1 mRNA downstream 349 13931140 ~ 14017600 (+) False LOC113533199
XM_034311801.1 mRNA downstream 349 13931140 ~ 14012366 (+) False LOC113533199
XM_026925185.2 mRNA downstream 26741 13957532 ~ 14017600 (+) False LOC113533199
XR_004577012.1 other upstream 410768 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 412699 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1260793 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1348036 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2250527 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4843979 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4886611 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile